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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6om6:B (3.1) BS01 rna ? GO:0000027 ... P60422 33741965
    2 6om6:C (3.1) BS01 rna ? GO:0000027 ... P60438 33741965
    3 6om6:D (3.1) BS01 rna ? GO:0001070 ... P60723 33741965
    4 6om6:E (3.1) BS01 rna ? GO:0000027 ... P62399 33741965
    5 6om6:E (3.1) BS02 rna ? GO:0000027 ... P62399 33741965
    6 6om6:E (3.1) BS03 rna ? GO:0000027 ... P62399 33741965
    7 6om6:F (3.1) BS01 rna ? GO:0000027 ... P0AG55 33741965
    8 6om6:G (3.1) BS01 rna ? GO:0002181 ... P0A7R1 33741965
    9 6om6:J (3.1) BS01 rna ? GO:0002181 ... P0AA10 33741965
    10 6om6:K (3.1) BS01 rna ? GO:0002181 ... P0ADY3 33741965
    11 6om6:K (3.1) BS02 rna ? GO:0002181 ... P0ADY3 33741965
    12 6om6:L (3.1) BS01 rna ? GO:0002181 ... P02413 33741965
    13 6om6:M (3.1) BS01 rna ? GO:0000027 ... P0ADY7 33741965
    14 6om6:M (3.1) BS02 rna ? GO:0000027 ... P0ADY7 33741965
    15 6om6:N (3.1) BS01 rna ? GO:0000027 ... P0AG44 33741965
    16 6om6:O (3.1) BS01 rna ? GO:0002181 ... P0C018 33741965
    17 6om6:O (3.1) BS02 rna ? GO:0002181 ... P0C018 33741965
    18 6om6:P (3.1) BS01 rna ? GO:0000027 ... P0A7K6 33741965
    19 6om6:P (3.1) BS02 rna ? GO:0000027 ... P0A7K6 33741965
    20 6om6:Q (3.1) BS01 rna ? GO:0000027 ... P0A7L3 33741965
    21 6om6:R (3.1) BS01 rna ? GO:0002181 ... P0AG48 33741965
    22 6om6:S (3.1) BS01 rna ? GO:0002181 ... P61175 33741965
    23 6om6:T (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 33741965
    24 6om6:U (3.1) BS01 rna ? GO:0000027 ... P60624 33741965
    25 6om6:V (3.1) BS01 rna ? GO:0000027 ... P68919 33741965
    26 6om6:W (3.1) BS01 rna ? GO:0000027 ... P0A7L8 33741965
    27 6om6:W (3.1) BS02 rna ? GO:0000027 ... P0A7L8 33741965
    28 6om6:W (3.1) BS03 rna ? GO:0000027 ... P0A7L8 33741965
    29 6om6:X (3.1) BS01 rna ? GO:0000027 ... P0A7M2 33741965
    30 6om6:Y (3.1) BS01 rna ? GO:0000027 ... P0A7M6 33741965
    31 6om6:Z (3.1) BS01 rna ? GO:0000027 ... P0AG51 33741965
    32 6om6:Z (3.1) BS02 rna ? GO:0000027 ... P0AG51 33741965
    33 6om6:a (3.1) BS01 rna ? GO:0002181 ... P0A7M9 33741965
    34 6om6:b (3.1) BS01 rna ? GO:0000027 ... P0A7N4 33741965
    35 6om6:c (3.1) BS01 rna ? GO:0000027 ... P0A7N9 33741965
    36 6om6:d (3.1) BS01 rna ? GO:0002181 ... P0A7P5 33741965
    37 6om6:e (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 33741965
    38 6om6:f (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 33741965
    39 6om6:g (3.1) BS01 rna ? GO:0000028 ... P0A7V0 33741965
    40 6om6:h (3.1) BS01 rna ? GO:0000028 ... P0A7V3 33741965
    41 6om6:i (3.1) BS01 rna ? GO:0000028 ... P0A7V8 33741965
    42 6om6:j (3.1) BS01 rna ? GO:0000028 ... P0A7W1 33741965
    43 6om6:k (3.1) BS01 rna ? GO:0002181 ... P02358 33741965
    44 6om6:l (3.1) BS01 rna ? GO:0000028 ... P02359 33741965
    45 6om6:m (3.1) BS01 rna ? GO:0000028 ... P0A7W7 33741965
    46 6om6:n (3.1) BS01 rna ? GO:0000049 ... P0A7X3 33741965
    47 6om6:n (3.1) BS02 rna ? GO:0000049 ... P0A7X3 33741965
    48 6om6:o (3.1) BS01 rna ? GO:0000049 ... P0A7R5 33741965
    49 6om6:p (3.1) BS01 rna ? GO:0002181 ... P0A7R9 33741965
    50 6om6:q (3.1) BS01 rna ? GO:0000049 ... P0A7S3 33741965
    51 6om6:r (3.1) BS01 rna ? GO:0000049 ... P0A7S9 33741965
    52 6om6:r (3.1) BS02 rna ? GO:0000049 ... P0A7S9 33741965
    53 6om6:s (3.1) BS01 rna ? GO:0000028 ... P0AG59 33741965
    54 6om6:t (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 33741965
    55 6om6:t (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 33741965
    56 6om6:u (3.1) BS01 rna ? GO:0000028 ... P0A7T3 33741965
    57 6om6:v (3.1) BS01 rna ? GO:0000028 ... P0AG63 33741965
    58 6om6:w (3.1) BS01 rna ? GO:0002181 ... P0A7T7 33741965
    59 6om6:x (3.1) BS01 rna ? GO:0000028 ... P0A7U3 33741965
    60 6om6:y (3.1) BS01 rna ? GO:0000028 ... P0A7U7 33741965
    61 6om6:z (3.1) BS01 rna ? GO:0000028 ... P68679 33741965
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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