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BioLiP
Download all results in tab-seperated text for 101 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6oli:A (3.5) BS01 rna ? GO:0002181 ... P62917 31160784
    2 6oli:B (3.5) BS01 rna ? GO:0002181 ... P39023 31160784
    3 6oli:C (3.5) BS01 rna ? GO:0003735 ... P36578 31160784
    4 6oli:C (3.5) BS02 rna ? GO:0003735 ... P36578 31160784
    5 6oli:F (3.5) BS01 rna ? GO:0000027 ... P46777 31160784
    6 6oli:F (3.5) BS02 rna ? GO:0000027 ... P46777 31160784
    7 6oli:G (3.5) BS01 rna ? GO:0003735 ... Q02878 31160784
    8 6oli:H (3.5) BS01 rna ? GO:0000463 ... P18124 31160784
    9 6oli:H (3.5) BS02 rna ? GO:0000463 ... P18124 31160784
    10 6oli:I (3.5) BS01 rna ? GO:0042254 ... P62424 31160784
    11 6oli:I (3.5) BS02 rna ? GO:0042254 ... P62424 31160784
    12 6oli:J (3.5) BS01 rna ? GO:0002181 ... P32969 31160784
    13 6oli:K (3.5) BS01 rna ? GO:0000027 ... P27635 31160784
    14 6oli:K (3.5) BS02 rna ? GO:0000027 ... P27635 31160784
    15 6oli:K (3.5) BS03 rna ? GO:0000027 ... P27635 31160784
    16 6oli:L (3.5) BS01 rna ? GO:0000027 ... P62913 31160784
    17 6oli:L (3.5) BS02 rna ? GO:0000027 ... P62913 31160784
    18 6oli:M (3.5) BS01 rna ? GO:0001824 ... P26373 31160784
    19 6oli:M (3.5) BS02 rna ? GO:0001824 ... P26373 31160784
    20 6oli:N (3.5) BS01 rna ? GO:0003723 ... P50914 31160784
    21 6oli:O (3.5) BS01 rna ? GO:0002181 ... P61313 31160784
    22 6oli:O (3.5) BS02 rna ? GO:0002181 ... P61313 31160784
    23 6oli:P (3.5) BS01 rna ? GO:0002181 ... P40429 31160784
    24 6oli:Q (3.5) BS01 rna ? GO:0003735 ... P18621 31160784
    25 6oli:Q (3.5) BS02 rna ? GO:0003735 ... P18621 31160784
    26 6oli:R (3.5) BS01 rna ? GO:0002181 ... Q07020 31160784
    27 6oli:S (3.5) BS01 rna ? GO:0002181 ... P84098 31160784
    28 6oli:S (3.5) BS02 rna ? GO:0002181 ... P84098 31160784
    29 6oli:SA (3.5) BS01 rna ? GO:0003735 ... P08865 31160784
    30 6oli:SB (3.5) BS01 rna ? GO:0003735 ... P61247 31160784
    31 6oli:SB (3.5) BS02 rna ? GO:0003735 ... P61247 31160784
    32 6oli:SC (3.5) BS01 rna ? GO:0003723 ... P15880 31160784
    33 6oli:SD (3.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 31160784
    34 6oli:SE (3.5) BS01 rna ? GO:0002181 ... P62701 31160784
    35 6oli:SF (3.5) BS01 rna ? GO:0000028 ... P46782 31160784
    36 6oli:SG (3.5) BS01 rna ? GO:0000082 ... P62753 31160784
    37 6oli:SH (3.5) BS01 rna ? GO:0001843 ... P62081 31160784
    38 6oli:SI (3.5) BS01 rna ? GO:0000462 ... P62241 31160784
    39 6oli:SI (3.5) BS02 rna ? GO:0000462 ... P62241 31160784
    40 6oli:SJ (3.5) BS01 rna ? GO:0002181 ... P46781 31160784
    41 6oli:SK (3.5) BS01 rna ? N/A P46783 31160784
    42 6oli:SL (3.5) BS01 rna ? GO:0002181 ... P62280 31160784
    43 6oli:SM (3.5) BS01 rna ? GO:0003735 ... P25398 31160784
    44 6oli:SN (3.5) BS01 rna ? GO:0002181 ... P62277 31160784
    45 6oli:SO (3.5) BS01 rna ? GO:0000028 ... P62263 31160784
    46 6oli:SP (3.5) BS01 rna ? GO:0003723 ... P62841 31160784
    47 6oli:SQ (3.5) BS01 rna ? GO:0000462 ... P62249 31160784
    48 6oli:SR (3.5) BS01 rna ? GO:0002181 ... P08708 31160784
    49 6oli:SS (3.5) BS01 rna ? GO:0002181 ... P62269 31160784
    50 6oli:ST (3.5) BS01 rna ? GO:0000028 ... P39019 31160784
    51 6oli:SU (3.5) BS01 rna ? GO:0003723 ... P60866 31160784
    52 6oli:SW (3.5) BS01 rna ? GO:0002181 ... P62244 31160784
    53 6oli:SX (3.5) BS01 rna ? GO:0002181 ... P62266 31160784
    54 6oli:SY (3.5) BS01 rna ? GO:0002181 ... P62847 31160784
    55 6oli:SZ (3.5) BS01 rna ? N/A P62851 31160784
    56 6oli:Sa (3.5) BS01 rna ? GO:0003735 ... P62854 31160784
    57 6oli:Sa (3.5) BS02 ZN ? GO:0003735 ... P62854 31160784
    58 6oli:Sb (3.5) BS01 rna ? GO:0000028 ... P42677 31160784
    59 6oli:Sc (3.5) BS01 rna ? GO:0000028 ... P62857 31160784
    60 6oli:Sd (3.5) BS01 rna ? GO:0002181 ... P62273 31160784
    61 6oli:Se (3.5) BS01 rna ? GO:0003735 ... P62861 31160784
    62 6oli:Sf (3.5) BS01 rna ? GO:0003735 ... P62979 31160784
    63 6oli:Sf (3.5) BS02 ZN ? GO:0003735 ... P62979 31160784
    64 6oli:Sg (3.5) BS01 rna ? GO:0001891 ... P63244 31160784
    65 6oli:T (3.5) BS01 rna ? GO:0002181 ... Q02543 31160784
    66 6oli:T (3.5) BS02 rna ? GO:0002181 ... Q02543 31160784
    67 6oli:U (3.5) BS01 rna ? GO:0002181 ... P46778 31160784
    68 6oli:U (3.5) BS02 rna ? GO:0002181 ... P46778 31160784
    69 6oli:V (3.5) BS01 rna ? GO:0003735 ... P35268 31160784
    70 6oli:W (3.5) BS01 rna ? GO:0000122 ... P62829 31160784
    71 6oli:W (3.5) BS02 rna ? GO:0000122 ... P62829 31160784
    72 6oli:X (3.5) BS01 rna ? N/A P83731 31160784
    73 6oli:Y (3.5) BS01 rna ? GO:0003735 ... P62750 31160784
    74 6oli:Y (3.5) BS02 rna ? GO:0003735 ... P62750 31160784
    75 6oli:Z (3.5) BS01 rna ? GO:0002181 ... P61254 31160784
    76 6oli:Z (3.5) BS02 rna ? GO:0002181 ... P61254 31160784
    77 6oli:a (3.5) BS01 rna ? GO:0002181 ... P61353 31160784
    78 6oli:b (3.5) BS01 rna ? GO:0002181 ... P46776 31160784
    79 6oli:c (3.5) BS01 rna ? GO:0003735 ... P47914 31160784
    80 6oli:d (3.5) BS01 rna ? GO:0002181 ... P62888 31160784
    81 6oli:d (3.5) BS02 rna ? GO:0002181 ... P62888 31160784
    82 6oli:e (3.5) BS01 rna ? GO:0003735 ... P62899 31160784
    83 6oli:f (3.5) BS01 rna ? GO:0002181 ... P62910 31160784
    84 6oli:g (3.5) BS01 rna ? GO:0000049 ... P18077 31160784
    85 6oli:h (3.5) BS01 rna ? GO:0002181 ... P49207 31160784
    86 6oli:i (3.5) BS01 rna ? GO:0000463 ... P42766 31160784
    87 6oli:i (3.5) BS02 rna ? GO:0000463 ... P42766 31160784
    88 6oli:j (3.5) BS01 rna ? GO:0002181 ... Q9Y3U8 31160784
    89 6oli:k (3.5) BS01 rna ? GO:0003735 ... P61927 31160784
    90 6oli:k (3.5) BS02 rna ? GO:0003735 ... P61927 31160784
    91 6oli:k (3.5) BS03 ZN ? GO:0003735 ... P61927 31160784
    92 6oli:l (3.5) BS01 rna ? GO:0001501 ... P63173 31160784
    93 6oli:m (3.5) BS01 rna ? GO:0002181 ... P62891 31160784
    94 6oli:m (3.5) BS02 rna ? GO:0002181 ... P62891 31160784
    95 6oli:n (3.5) BS01 rna ? GO:0003735 ... P62987 31160784
    96 6oli:p (3.5) BS01 rna ? GO:0002181 ... P83881 31160784
    97 6oli:p (3.5) BS02 rna ? GO:0002181 ... P83881 31160784
    98 6oli:p (3.5) BS03 ZN ? GO:0002181 ... P83881 31160784
    99 6oli:q (3.5) BS01 rna ? GO:0002181 ... P61513 31160784
    100 6oli:q (3.5) BS02 ZN ? GO:0002181 ... P61513 31160784
    101 6oli:r (3.5) BS01 rna ? GO:0003735 ... P46779 31160784
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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