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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ogg:8 (4.2) BS01 rna ? GO:0003747 ... P07012 31513010
    2 6ogg:8 (4.2) BS02 rna ? GO:0003747 ... P07012 31513010
    3 6ogg:8 (4.2) BS03 rna ? GO:0003747 ... P07012 31513010
    4 6ogg:B (4.2) BS01 rna ? GO:0000027 ... P0A7N4 31513010
    5 6ogg:C (4.2) BS01 rna ? GO:0000027 ... P0A7N9 31513010
    6 6ogg:D (4.2) BS01 rna ? GO:0002181 ... P0A7P5 31513010
    7 6ogg:E (4.2) BS01 rna ? GO:0002181 ... P0A7Q1 31513010
    8 6ogg:F (4.2) BS01 rna ? GO:0002181 ... P0A7Q6 31513010
    9 6ogg:G (4.2) BS01 rna ? GO:0000028 ... P0A7V0 31513010
    10 6ogg:H (4.2) BS01 rna ? GO:0000028 ... P0A7V3 31513010
    11 6ogg:I (4.2) BS01 rna ? GO:0000028 ... P0A7V8 31513010
    12 6ogg:J (4.2) BS01 rna ? GO:0000028 ... P0A7W1 31513010
    13 6ogg:K (4.2) BS01 rna ? GO:0002181 ... P02358 31513010
    14 6ogg:L (4.2) BS01 rna ? GO:0003723 ... P02359 31513010
    15 6ogg:M (4.2) BS01 rna ? GO:0000028 ... P0A7W7 31513010
    16 6ogg:N (4.2) BS01 rna ? GO:0000049 ... P0A7X3 31513010
    17 6ogg:O (4.2) BS01 rna ? GO:0000049 ... P0A7R5 31513010
    18 6ogg:P (4.2) BS01 rna ? GO:0002181 ... P0A7R9 31513010
    19 6ogg:Q (4.2) BS01 rna ? GO:0000049 ... P0A7S3 31513010
    20 6ogg:R (4.2) BS01 rna ? GO:0000049 ... P0A7S9 31513010
    21 6ogg:S (4.2) BS01 rna ? GO:0000028 ... P0AG59 31513010
    22 6ogg:T (4.2) BS01 rna ? GO:0000028 ... P0ADZ4 31513010
    23 6ogg:U (4.2) BS01 rna ? GO:0000028 ... P0A7T3 31513010
    24 6ogg:V (4.2) BS01 rna ? GO:0000028 ... P0AG63 31513010
    25 6ogg:W (4.2) BS01 rna ? GO:0002181 ... P0A7T7 31513010
    26 6ogg:X (4.2) BS01 rna ? GO:0000028 ... P0A7U3 31513010
    27 6ogg:Y (4.2) BS01 rna ? GO:0000028 ... P0A7U7 31513010
    28 6ogg:Z (4.2) BS01 rna ? GO:0000028 ... P68679 31513010
    29 6ogg:Z (4.2) BS02 rna ? GO:0000028 ... P68679 31513010
    30 6ogg:a (4.2) BS01 rna ? GO:0000027 ... P0A7L0 31513010
    31 6ogg:b (4.2) BS01 rna ? GO:0000027 ... P60422 31513010
    32 6ogg:c (4.2) BS01 rna ? GO:0000027 ... P60438 31513010
    33 6ogg:d (4.2) BS01 rna ? GO:0001070 ... P60723 31513010
    34 6ogg:e (4.2) BS01 rna ? GO:0000027 ... P62399 31513010
    35 6ogg:e (4.2) BS02 rna ? GO:0000027 ... P62399 31513010
    36 6ogg:f (4.2) BS01 rna ? GO:0000027 ... P0AG55 31513010
    37 6ogg:g (4.2) BS01 rna ? GO:0002181 ... P0A7R1 31513010
    38 6ogg:j (4.2) BS01 rna ? GO:0002181 ... P0AA10 31513010
    39 6ogg:k (4.2) BS01 rna ? GO:0002181 ... P0ADY3 31513010
    40 6ogg:k (4.2) BS02 rna ? GO:0002181 ... P0ADY3 31513010
    41 6ogg:l (4.2) BS01 rna ? GO:0002181 ... P02413 31513010
    42 6ogg:m (4.2) BS01 rna ? GO:0000027 ... P0ADY7 31513010
    43 6ogg:m (4.2) BS02 rna ? GO:0000027 ... P0ADY7 31513010
    44 6ogg:n (4.2) BS01 rna ? GO:0000027 ... P0AG44 31513010
    45 6ogg:o (4.2) BS01 rna ? GO:0002181 ... P0C018 31513010
    46 6ogg:o (4.2) BS02 rna ? GO:0002181 ... P0C018 31513010
    47 6ogg:p (4.2) BS01 rna ? GO:0000027 ... P0A7K6 31513010
    48 6ogg:p (4.2) BS02 rna ? GO:0000027 ... P0A7K6 31513010
    49 6ogg:q (4.2) BS01 rna ? GO:0000027 ... P0A7L3 31513010
    50 6ogg:r (4.2) BS01 rna ? GO:0002181 ... P0AG48 31513010
    51 6ogg:s (4.2) BS01 rna ? GO:0002181 ... P61175 31513010
    52 6ogg:t (4.2) BS01 rna ? GO:0000027 ... P0ADZ0 31513010
    53 6ogg:u (4.2) BS01 rna ? GO:0000027 ... P60624 31513010
    54 6ogg:v (4.2) BS01 rna ? GO:0000027 ... P68919 31513010
    55 6ogg:v (4.2) BS02 rna ? GO:0000027 ... P68919 31513010
    56 6ogg:w (4.2) BS01 rna ? GO:0000027 ... P0A7L8 31513010
    57 6ogg:w (4.2) BS02 rna ? GO:0000027 ... P0A7L8 31513010
    58 6ogg:x (4.2) BS01 rna ? GO:0000027 ... P0A7M2 31513010
    59 6ogg:y (4.2) BS01 rna ? GO:0000027 ... P0A7M6 31513010
    60 6ogg:z (4.2) BS01 rna ? GO:0000027 ... P0AG51 31513010
    61 6ogg:z (4.2) BS02 rna ? GO:0000027 ... P0AG51 31513010
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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