Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 261 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6of1:10 (2.8) BS01 rna ? GO:0003735 ... P60493 30936109
    2 6of1:10 (2.8) BS02 rna ? GO:0003735 ... P60493 30936109
    3 6of1:10 (2.8) BS03 MG ? GO:0003735 ... P60493 30936109
    4 6of1:10 (2.8) BS04 MG ? GO:0003735 ... P60493 30936109
    5 6of1:11 (2.8) BS01 rna ? GO:0003735 ... P60494 30936109
    6 6of1:11 (2.8) BS02 MG ? GO:0003735 ... P60494 30936109
    7 6of1:12 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 30936109
    8 6of1:12 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 30936109
    9 6of1:13 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 30936109
    10 6of1:13 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 30936109
    11 6of1:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 30936109
    12 6of1:13 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 30936109
    13 6of1:14 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 30936109
    14 6of1:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 30936109
    15 6of1:15 (2.8) BS01 rna ? GO:0003735 ... P80339 30936109
    16 6of1:15 (2.8) BS02 MG ? GO:0003735 ... P80339 30936109
    17 6of1:15 (2.8) BS03 MG ? GO:0003735 ... P80339 30936109
    18 6of1:15 (2.8) BS04 ZN ? GO:0003735 ... P80339 30936109
    19 6of1:16 (2.8) BS01 rna ? GO:0000049 ... P35871 30936109
    20 6of1:16 (2.8) BS02 MG ? GO:0000049 ... P35871 30936109
    21 6of1:16 (2.8) BS03 MG ? GO:0000049 ... P35871 30936109
    22 6of1:16 (2.8) BS04 ZN ? GO:0000049 ... P35871 30936109
    23 6of1:17 (2.8) BS01 rna ? GO:0003735 ... P80340 30936109
    24 6of1:17 (2.8) BS02 MG ? GO:0003735 ... P80340 30936109
    25 6of1:17 (2.8) BS03 MG ? GO:0003735 ... P80340 30936109
    26 6of1:18 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 30936109
    27 6of1:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 30936109
    28 6of1:18 (2.8) BS03 MG ? GO:0003735 ... Q5SKU1 30936109
    29 6of1:19 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 30936109
    30 6of1:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 30936109
    31 6of1:1D (2.8) BS01 rna ? GO:0002181 ... P60405 30936109
    32 6of1:1D (2.8) BS02 rna ? GO:0002181 ... P60405 30936109
    33 6of1:1D (2.8) BS03 MG ? GO:0002181 ... P60405 30936109
    34 6of1:1D (2.8) BS04 MG ? GO:0002181 ... P60405 30936109
    35 6of1:1D (2.8) BS05 MG ? GO:0002181 ... P60405 30936109
    36 6of1:1D (2.8) BS06 MG ? GO:0002181 ... P60405 30936109
    37 6of1:1D (2.8) BS07 MG ? GO:0002181 ... P60405 30936109
    38 6of1:1D (2.8) BS08 MG ? GO:0002181 ... P60405 30936109
    39 6of1:1D (2.8) BS09 MG ? GO:0002181 ... P60405 30936109
    40 6of1:1D (2.8) BS10 MG ? GO:0002181 ... P60405 30936109
    41 6of1:1D (2.8) BS11 MG ? GO:0002181 ... P60405 30936109
    42 6of1:1D (2.8) BS12 MG ? GO:0002181 ... P60405 30936109
    43 6of1:1D (2.8) BS13 MG ? GO:0002181 ... P60405 30936109
    44 6of1:1E (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 30936109
    45 6of1:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 30936109
    46 6of1:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 30936109
    47 6of1:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 30936109
    48 6of1:1E (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 30936109
    49 6of1:1E (2.8) BS06 MG ? GO:0003735 ... Q5SHN8 30936109
    50 6of1:1F (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 30936109
    51 6of1:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 30936109
    52 6of1:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 30936109
    53 6of1:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 30936109
    54 6of1:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 30936109
    55 6of1:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 30936109
    56 6of1:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 30936109
    57 6of1:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 30936109
    58 6of1:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 30936109
    59 6of1:1G (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 30936109
    60 6of1:1G (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 30936109
    61 6of1:1G (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 30936109
    62 6of1:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 30936109
    63 6of1:1G (2.8) BS05 MG ? GO:0000049 ... Q5SHQ0 30936109
    64 6of1:1H (2.8) BS01 rna ? GO:0002181 ... P0DOY8 30936109
    65 6of1:1I (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 30936109
    66 6of1:1N (2.8) BS01 rna ? GO:0003729 ... P60488 30936109
    67 6of1:1N (2.8) BS02 MG ? GO:0003729 ... P60488 30936109
    68 6of1:1N (2.8) BS03 MG ? GO:0003729 ... P60488 30936109
    69 6of1:1O (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 30936109
    70 6of1:1O (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 30936109
    71 6of1:1O (2.8) BS03 MG ? GO:0003735 ... Q5SHP8 30936109
    72 6of1:1P (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 30936109
    73 6of1:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 30936109
    74 6of1:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 30936109
    75 6of1:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 30936109
    76 6of1:1P (2.8) BS05 MG ? GO:0003735 ... Q5SHQ7 30936109
    77 6of1:1P (2.8) BS06 MG ? GO:0003735 ... Q5SHQ7 30936109
    78 6of1:1Q (2.8) BS01 rna ? GO:0000049 ... P60489 30936109
    79 6of1:1Q (2.8) BS02 rna ? GO:0000049 ... P60489 30936109
    80 6of1:1Q (2.8) BS03 rna ? GO:0000049 ... P60489 30936109
    81 6of1:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 30936109
    82 6of1:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 30936109
    83 6of1:1R (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 30936109
    84 6of1:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 30936109
    85 6of1:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 30936109
    86 6of1:1R (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 30936109
    87 6of1:1S (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 30936109
    88 6of1:1S (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 30936109
    89 6of1:1S (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 30936109
    90 6of1:1S (2.8) BS04 MG ? GO:0003735 ... Q5SHQ4 30936109
    91 6of1:1T (2.8) BS01 rna ? GO:0003735 ... P60490 30936109
    92 6of1:1T (2.8) BS02 rna ? GO:0003735 ... P60490 30936109
    93 6of1:1U (2.8) BS01 rna ? GO:0000027 ... P60491 30936109
    94 6of1:1U (2.8) BS02 MG ? GO:0000027 ... P60491 30936109
    95 6of1:1U (2.8) BS03 MG ? GO:0000027 ... P60491 30936109
    96 6of1:1U (2.8) BS04 MG ? GO:0000027 ... P60491 30936109
    97 6of1:1U (2.8) BS05 MG ? GO:0000027 ... P60491 30936109
    98 6of1:1U (2.8) BS06 MG ? GO:0000027 ... P60491 30936109
    99 6of1:1U (2.8) BS07 MG ? GO:0000027 ... P60491 30936109
    100 6of1:1U (2.8) BS08 MG ? GO:0000027 ... P60491 30936109
    101 6of1:1U (2.8) BS09 MG ? GO:0000027 ... P60491 30936109
    102 6of1:1V (2.8) BS01 rna ? GO:0003723 ... P60492 30936109
    103 6of1:1V (2.8) BS02 MG ? GO:0003723 ... P60492 30936109
    104 6of1:1V (2.8) BS03 MG ? GO:0003723 ... P60492 30936109
    105 6of1:1V (2.8) BS04 MG ? GO:0003723 ... P60492 30936109
    106 6of1:1V (2.8) BS05 MG ? GO:0003723 ... P60492 30936109
    107 6of1:1V (2.8) BS06 MG ? GO:0003723 ... P60492 30936109
    108 6of1:1V (2.8) BS07 MG ? GO:0003723 ... P60492 30936109
    109 6of1:1V (2.8) BS08 MG ? GO:0003723 ... P60492 30936109
    110 6of1:1W (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 30936109
    111 6of1:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 30936109
    112 6of1:1W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 30936109
    113 6of1:1X (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 30936109
    114 6of1:1X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 30936109
    115 6of1:1X (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 30936109
    116 6of1:1X (2.8) BS04 MG ? GO:0000027 ... Q5SHP0 30936109
    117 6of1:1X (2.8) BS05 MG ? GO:0000027 ... Q5SHP0 30936109
    118 6of1:1X (2.8) BS06 MG ? GO:0000027 ... Q5SHP0 30936109
    119 6of1:1Y (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 30936109
    120 6of1:1Y (2.8) BS02 MG ? GO:0003723 ... Q5SHP9 30936109
    121 6of1:1Y (2.8) BS03 ZN ? GO:0003723 ... Q5SHP9 30936109
    122 6of1:1Z (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 30936109
    123 6of1:1b (2.8) BS01 rna ? GO:0003735 ... P80371 30936109
    124 6of1:1b (2.8) BS02 MG ? GO:0003735 ... P80371 30936109
    125 6of1:1b (2.8) BS03 MG ? GO:0003735 ... P80371 30936109
    126 6of1:1c (2.8) BS01 rna ? GO:0003676 ... P80372 30936109
    127 6of1:1d (2.8) BS01 rna ? GO:0003723 ... P80373 30936109
    128 6of1:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 30936109
    129 6of1:1e (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 30936109
    130 6of1:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 30936109
    131 6of1:1f (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 30936109
    132 6of1:1g (2.8) BS01 rna ? GO:0000028 ... P17291 30936109
    133 6of1:1g (2.8) BS02 rna ? GO:0000028 ... P17291 30936109
    134 6of1:1h (2.8) BS01 rna ? GO:0003735 ... P0DOY9 30936109
    135 6of1:1i (2.8) BS01 rna ? GO:0000049 ... P80374 30936109
    136 6of1:1i (2.8) BS02 rna ? GO:0000049 ... P80374 30936109
    137 6of1:1j (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 30936109
    138 6of1:1k (2.8) BS01 rna ? GO:0003735 ... P80376 30936109
    139 6of1:1k (2.8) BS02 MG ? GO:0003735 ... P80376 30936109
    140 6of1:1l (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 30936109
    141 6of1:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 30936109
    142 6of1:1m (2.8) BS01 rna ? GO:0000049 ... P80377 30936109
    143 6of1:1m (2.8) BS02 rna ? GO:0000049 ... P80377 30936109
    144 6of1:1m (2.8) BS03 rna ? GO:0000049 ... P80377 30936109
    145 6of1:1m (2.8) BS04 rna ? GO:0000049 ... P80377 30936109
    146 6of1:1m (2.8) BS05 MG ? GO:0000049 ... P80377 30936109
    147 6of1:1n (2.8) BS01 rna ? GO:0003735 ... P0DOY6 30936109
    148 6of1:1n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 30936109
    149 6of1:1o (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 30936109
    150 6of1:1o (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 30936109
    151 6of1:1p (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 30936109
    152 6of1:1q (2.8) BS01 rna ? GO:0003735 ... P0DOY7 30936109
    153 6of1:1r (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 30936109
    154 6of1:1s (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 30936109
    155 6of1:1t (2.8) BS01 rna ? GO:0003723 ... P80380 30936109
    156 6of1:1t (2.8) BS02 MG ? GO:0003723 ... P80380 30936109
    157 6of1:20 (2.8) BS01 rna ? GO:0003735 ... P60493 30936109
    158 6of1:20 (2.8) BS02 rna ? GO:0003735 ... P60493 30936109
    159 6of1:21 (2.8) BS01 rna ? GO:0003735 ... P60494 30936109
    160 6of1:21 (2.8) BS02 rna ? GO:0003735 ... P60494 30936109
    161 6of1:22 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 30936109
    162 6of1:23 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 30936109
    163 6of1:23 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 30936109
    164 6of1:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 30936109
    165 6of1:23 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 30936109
    166 6of1:24 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 30936109
    167 6of1:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 30936109
    168 6of1:25 (2.8) BS01 rna ? GO:0003735 ... P80339 30936109
    169 6of1:25 (2.8) BS02 MG ? GO:0003735 ... P80339 30936109
    170 6of1:25 (2.8) BS03 ZN ? GO:0003735 ... P80339 30936109
    171 6of1:26 (2.8) BS01 rna ? GO:0000049 ... P35871 30936109
    172 6of1:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 30936109
    173 6of1:27 (2.8) BS01 rna ? GO:0003735 ... P80340 30936109
    174 6of1:27 (2.8) BS02 MG ? GO:0003735 ... P80340 30936109
    175 6of1:28 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 30936109
    176 6of1:29 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 30936109
    177 6of1:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 30936109
    178 6of1:2D (2.8) BS01 rna ? GO:0002181 ... P60405 30936109
    179 6of1:2D (2.8) BS02 rna ? GO:0002181 ... P60405 30936109
    180 6of1:2D (2.8) BS03 MG ? GO:0002181 ... P60405 30936109
    181 6of1:2D (2.8) BS04 MG ? GO:0002181 ... P60405 30936109
    182 6of1:2D (2.8) BS05 MG ? GO:0002181 ... P60405 30936109
    183 6of1:2D (2.8) BS06 MG ? GO:0002181 ... P60405 30936109
    184 6of1:2D (2.8) BS07 MG ? GO:0002181 ... P60405 30936109
    185 6of1:2E (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 30936109
    186 6of1:2E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 30936109
    187 6of1:2F (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 30936109
    188 6of1:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 30936109
    189 6of1:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 30936109
    190 6of1:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 30936109
    191 6of1:2F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 30936109
    192 6of1:2G (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 30936109
    193 6of1:2G (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 30936109
    194 6of1:2G (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 30936109
    195 6of1:2G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 30936109
    196 6of1:2H (2.8) BS01 rna ? GO:0002181 ... P0DOY8 30936109
    197 6of1:2I (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 30936109
    198 6of1:2N (2.8) BS01 rna ? GO:0003729 ... P60488 30936109
    199 6of1:2O (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 30936109
    200 6of1:2O (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 30936109
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218