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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 253 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6o97:10 (2.75) BS01 rna ? GO:0003735 ... P60493 30793894
    2 6o97:10 (2.75) BS02 rna ? GO:0003735 ... P60493 30793894
    3 6o97:10 (2.75) BS03 MG ? GO:0003735 ... P60493 30793894
    4 6o97:11 (2.75) BS01 rna ? GO:0003735 ... P60494 30793894
    5 6o97:11 (2.75) BS02 rna ? GO:0003735 ... P60494 30793894
    6 6o97:11 (2.75) BS03 MG ? GO:0003735 ... P60494 30793894
    7 6o97:12 (2.75) BS01 rna ? GO:0003735 ... Q5SHP6 30793894
    8 6o97:12 (2.75) BS02 MG ? GO:0003735 ... Q5SHP6 30793894
    9 6o97:13 (2.75) BS01 rna ? GO:0003735 ... Q5SHQ6 30793894
    10 6o97:13 (2.75) BS02 rna ? GO:0003735 ... Q5SHQ6 30793894
    11 6o97:13 (2.75) BS03 MG ? GO:0003735 ... Q5SHQ6 30793894
    12 6o97:13 (2.75) BS04 MG ? GO:0003735 ... Q5SHQ6 30793894
    13 6o97:14 (2.75) BS01 rna ? GO:0003735 ... Q5SJE1 30793894
    14 6o97:14 (2.75) BS02 ZN ? GO:0003735 ... Q5SJE1 30793894
    15 6o97:15 (2.75) BS01 rna ? GO:0003735 ... P80339 30793894
    16 6o97:15 (2.75) BS02 MG ? GO:0003735 ... P80339 30793894
    17 6o97:15 (2.75) BS03 MG ? GO:0003735 ... P80339 30793894
    18 6o97:15 (2.75) BS04 ZN ? GO:0003735 ... P80339 30793894
    19 6o97:16 (2.75) BS01 rna ? GO:0000049 ... P35871 30793894
    20 6o97:16 (2.75) BS02 MG ? GO:0000049 ... P35871 30793894
    21 6o97:16 (2.75) BS03 MG ? GO:0000049 ... P35871 30793894
    22 6o97:16 (2.75) BS04 ZN ? GO:0000049 ... P35871 30793894
    23 6o97:17 (2.75) BS01 rna ? GO:0003735 ... P80340 30793894
    24 6o97:17 (2.75) BS02 MG ? GO:0003735 ... P80340 30793894
    25 6o97:18 (2.75) BS01 rna ? GO:0003735 ... Q5SKU1 30793894
    26 6o97:18 (2.75) BS02 MG ? GO:0003735 ... Q5SKU1 30793894
    27 6o97:19 (2.75) BS01 rna ? GO:0003735 ... Q5SHR2 30793894
    28 6o97:19 (2.75) BS02 ZN ? GO:0003735 ... Q5SHR2 30793894
    29 6o97:1D (2.75) BS01 rna ? GO:0002181 ... P60405 30793894
    30 6o97:1D (2.75) BS02 rna ? GO:0002181 ... P60405 30793894
    31 6o97:1D (2.75) BS03 MG ? GO:0002181 ... P60405 30793894
    32 6o97:1D (2.75) BS04 MG ? GO:0002181 ... P60405 30793894
    33 6o97:1D (2.75) BS05 MG ? GO:0002181 ... P60405 30793894
    34 6o97:1D (2.75) BS06 MG ? GO:0002181 ... P60405 30793894
    35 6o97:1D (2.75) BS07 MG ? GO:0002181 ... P60405 30793894
    36 6o97:1D (2.75) BS08 MG ? GO:0002181 ... P60405 30793894
    37 6o97:1D (2.75) BS09 MG ? GO:0002181 ... P60405 30793894
    38 6o97:1D (2.75) BS10 MG ? GO:0002181 ... P60405 30793894
    39 6o97:1D (2.75) BS11 MG ? GO:0002181 ... P60405 30793894
    40 6o97:1D (2.75) BS12 MG ? GO:0002181 ... P60405 30793894
    41 6o97:1E (2.75) BS01 rna ? GO:0003735 ... Q5SHN8 30793894
    42 6o97:1E (2.75) BS02 MG ? GO:0003735 ... Q5SHN8 30793894
    43 6o97:1E (2.75) BS03 MG ? GO:0003735 ... Q5SHN8 30793894
    44 6o97:1E (2.75) BS04 MG ? GO:0003735 ... Q5SHN8 30793894
    45 6o97:1F (2.75) BS01 rna ? GO:0003735 ... Q5SHN9 30793894
    46 6o97:1F (2.75) BS02 MG ? GO:0003735 ... Q5SHN9 30793894
    47 6o97:1F (2.75) BS03 MG ? GO:0003735 ... Q5SHN9 30793894
    48 6o97:1F (2.75) BS04 MG ? GO:0003735 ... Q5SHN9 30793894
    49 6o97:1F (2.75) BS05 MG ? GO:0003735 ... Q5SHN9 30793894
    50 6o97:1F (2.75) BS06 MG ? GO:0003735 ... Q5SHN9 30793894
    51 6o97:1F (2.75) BS07 MG ? GO:0003735 ... Q5SHN9 30793894
    52 6o97:1G (2.75) BS01 rna ? GO:0000049 ... Q5SHQ0 30793894
    53 6o97:1G (2.75) BS02 rna ? GO:0000049 ... Q5SHQ0 30793894
    54 6o97:1G (2.75) BS03 rna ? GO:0000049 ... Q5SHQ0 30793894
    55 6o97:1G (2.75) BS04 MG ? GO:0000049 ... Q5SHQ0 30793894
    56 6o97:1G (2.75) BS05 MG ? GO:0000049 ... Q5SHQ0 30793894
    57 6o97:1H (2.75) BS01 rna ? GO:0002181 ... P0DOY8 30793894
    58 6o97:1I (2.75) BS01 rna ? GO:0003735 ... Q5SLQ1 30793894
    59 6o97:1N (2.75) BS01 rna ? GO:0003729 ... P60488 30793894
    60 6o97:1N (2.75) BS02 MG ? GO:0003729 ... P60488 30793894
    61 6o97:1N (2.75) BS03 MG ? GO:0003729 ... P60488 30793894
    62 6o97:1N (2.75) BS04 MG ? GO:0003729 ... P60488 30793894
    63 6o97:1N (2.75) BS05 MG ? GO:0003729 ... P60488 30793894
    64 6o97:1N (2.75) BS06 MG ? GO:0003729 ... P60488 30793894
    65 6o97:1O (2.75) BS01 rna ? GO:0003735 ... Q5SHP8 30793894
    66 6o97:1O (2.75) BS02 rna ? GO:0003735 ... Q5SHP8 30793894
    67 6o97:1O (2.75) BS03 MG ? GO:0003735 ... Q5SHP8 30793894
    68 6o97:1O (2.75) BS04 MG ? GO:0003735 ... Q5SHP8 30793894
    69 6o97:1P (2.75) BS01 rna ? GO:0003735 ... Q5SHQ7 30793894
    70 6o97:1P (2.75) BS02 MG ? GO:0003735 ... Q5SHQ7 30793894
    71 6o97:1P (2.75) BS03 MG ? GO:0003735 ... Q5SHQ7 30793894
    72 6o97:1P (2.75) BS04 MG ? GO:0003735 ... Q5SHQ7 30793894
    73 6o97:1P (2.75) BS05 MG ? GO:0003735 ... Q5SHQ7 30793894
    74 6o97:1Q (2.75) BS01 rna ? GO:0000049 ... P60489 30793894
    75 6o97:1Q (2.75) BS02 rna ? GO:0000049 ... P60489 30793894
    76 6o97:1Q (2.75) BS03 rna ? GO:0000049 ... P60489 30793894
    77 6o97:1Q (2.75) BS04 MG ? GO:0000049 ... P60489 30793894
    78 6o97:1Q (2.75) BS05 MG ? GO:0000049 ... P60489 30793894
    79 6o97:1Q (2.75) BS06 MG ? GO:0000049 ... P60489 30793894
    80 6o97:1Q (2.75) BS07 MG ? GO:0000049 ... P60489 30793894
    81 6o97:1R (2.75) BS01 rna ? GO:0003735 ... Q9Z9H5 30793894
    82 6o97:1R (2.75) BS02 MG ? GO:0003735 ... Q9Z9H5 30793894
    83 6o97:1R (2.75) BS03 MG ? GO:0003735 ... Q9Z9H5 30793894
    84 6o97:1R (2.75) BS04 MG ? GO:0003735 ... Q9Z9H5 30793894
    85 6o97:1S (2.75) BS01 rna ? GO:0003735 ... Q5SHQ4 30793894
    86 6o97:1S (2.75) BS02 rna ? GO:0003735 ... Q5SHQ4 30793894
    87 6o97:1S (2.75) BS03 MG ? GO:0003735 ... Q5SHQ4 30793894
    88 6o97:1S (2.75) BS04 MG ? GO:0003735 ... Q5SHQ4 30793894
    89 6o97:1T (2.75) BS01 rna ? GO:0003735 ... P60490 30793894
    90 6o97:1T (2.75) BS02 rna ? GO:0003735 ... P60490 30793894
    91 6o97:1U (2.75) BS01 rna ? GO:0000027 ... P60491 30793894
    92 6o97:1U (2.75) BS02 MG ? GO:0000027 ... P60491 30793894
    93 6o97:1U (2.75) BS03 MG ? GO:0000027 ... P60491 30793894
    94 6o97:1U (2.75) BS04 MG ? GO:0000027 ... P60491 30793894
    95 6o97:1U (2.75) BS05 MG ? GO:0000027 ... P60491 30793894
    96 6o97:1U (2.75) BS06 MG ? GO:0000027 ... P60491 30793894
    97 6o97:1V (2.75) BS01 rna ? GO:0003723 ... P60492 30793894
    98 6o97:1V (2.75) BS02 MG ? GO:0003723 ... P60492 30793894
    99 6o97:1V (2.75) BS03 MG ? GO:0003723 ... P60492 30793894
    100 6o97:1V (2.75) BS04 MG ? GO:0003723 ... P60492 30793894
    101 6o97:1V (2.75) BS05 MG ? GO:0003723 ... P60492 30793894
    102 6o97:1V (2.75) BS06 MG ? GO:0003723 ... P60492 30793894
    103 6o97:1V (2.75) BS07 MG ? GO:0003723 ... P60492 30793894
    104 6o97:1W (2.75) BS01 rna ? GO:0003735 ... Q5SHP3 30793894
    105 6o97:1W (2.75) BS02 MG ? GO:0003735 ... Q5SHP3 30793894
    106 6o97:1W (2.75) BS03 MG ? GO:0003735 ... Q5SHP3 30793894
    107 6o97:1W (2.75) BS04 MG ? GO:0003735 ... Q5SHP3 30793894
    108 6o97:1W (2.75) BS05 MG ? GO:0003735 ... Q5SHP3 30793894
    109 6o97:1W (2.75) BS06 MG ? GO:0003735 ... Q5SHP3 30793894
    110 6o97:1X (2.75) BS01 rna ? GO:0000027 ... Q5SHP0 30793894
    111 6o97:1X (2.75) BS02 MG ? GO:0000027 ... Q5SHP0 30793894
    112 6o97:1X (2.75) BS03 MG ? GO:0000027 ... Q5SHP0 30793894
    113 6o97:1X (2.75) BS04 MG ? GO:0000027 ... Q5SHP0 30793894
    114 6o97:1X (2.75) BS05 MG ? GO:0000027 ... Q5SHP0 30793894
    115 6o97:1X (2.75) BS06 MG ? GO:0000027 ... Q5SHP0 30793894
    116 6o97:1Y (2.75) BS01 rna ? GO:0003723 ... Q5SHP9 30793894
    117 6o97:1Y (2.75) BS02 MG ? GO:0003723 ... Q5SHP9 30793894
    118 6o97:1Y (2.75) BS03 MG ? GO:0003723 ... Q5SHP9 30793894
    119 6o97:1Y (2.75) BS04 ZN ? GO:0003723 ... Q5SHP9 30793894
    120 6o97:1Z (2.75) BS01 rna ? GO:0003723 ... Q5SHZ1 30793894
    121 6o97:1Z (2.75) BS02 MG ? GO:0003723 ... Q5SHZ1 30793894
    122 6o97:1b (2.75) BS01 rna ? GO:0003735 ... P80371 30793894
    123 6o97:1b (2.75) BS02 MG ? GO:0003735 ... P80371 30793894
    124 6o97:1c (2.75) BS01 rna ? GO:0003676 ... P80372 30793894
    125 6o97:1d (2.75) BS01 rna ? GO:0003723 ... P80373 30793894
    126 6o97:1d (2.75) BS02 SF4 ? GO:0003723 ... P80373 30793894
    127 6o97:1e (2.75) BS01 rna ? GO:0003723 ... Q5SHQ5 30793894
    128 6o97:1e (2.75) BS02 MG ? GO:0003723 ... Q5SHQ5 30793894
    129 6o97:1e (2.75) BS03 MG ? GO:0003723 ... Q5SHQ5 30793894
    130 6o97:1f (2.75) BS01 rna ? GO:0003735 ... Q5SLP8 30793894
    131 6o97:1g (2.75) BS01 rna ? GO:0000028 ... P17291 30793894
    132 6o97:1g (2.75) BS02 rna ? GO:0000028 ... P17291 30793894
    133 6o97:1h (2.75) BS01 rna ? GO:0003735 ... P0DOY9 30793894
    134 6o97:1i (2.75) BS01 rna ? GO:0000049 ... P80374 30793894
    135 6o97:1i (2.75) BS02 rna ? GO:0000049 ... P80374 30793894
    136 6o97:1j (2.75) BS01 rna ? GO:0000049 ... Q5SHN7 30793894
    137 6o97:1k (2.75) BS01 rna ? GO:0003735 ... P80376 30793894
    138 6o97:1k (2.75) BS02 MG ? GO:0003735 ... P80376 30793894
    139 6o97:1l (2.75) BS01 rna ? GO:0000049 ... Q5SHN3 30793894
    140 6o97:1l (2.75) BS02 MG ? GO:0000049 ... Q5SHN3 30793894
    141 6o97:1m (2.75) BS01 rna ? GO:0000049 ... P80377 30793894
    142 6o97:1m (2.75) BS02 rna ? GO:0000049 ... P80377 30793894
    143 6o97:1m (2.75) BS03 rna ? GO:0000049 ... P80377 30793894
    144 6o97:1m (2.75) BS04 MG ? GO:0000049 ... P80377 30793894
    145 6o97:1n (2.75) BS01 rna ? GO:0003735 ... P0DOY6 30793894
    146 6o97:1n (2.75) BS02 ZN ? GO:0003735 ... P0DOY6 30793894
    147 6o97:1o (2.75) BS01 rna ? GO:0003735 ... Q5SJ76 30793894
    148 6o97:1o (2.75) BS02 rna ? GO:0003735 ... Q5SJ76 30793894
    149 6o97:1p (2.75) BS01 rna ? GO:0003735 ... Q5SJH3 30793894
    150 6o97:1q (2.75) BS01 rna ? GO:0003735 ... P0DOY7 30793894
    151 6o97:1r (2.75) BS01 rna ? GO:0003735 ... Q5SLQ0 30793894
    152 6o97:1s (2.75) BS01 rna ? GO:0000028 ... Q5SHP2 30793894
    153 6o97:1t (2.75) BS01 rna ? GO:0003723 ... P80380 30793894
    154 6o97:1t (2.75) BS02 MG ? GO:0003723 ... P80380 30793894
    155 6o97:20 (2.75) BS01 rna ? GO:0003735 ... P60493 30793894
    156 6o97:20 (2.75) BS02 rna ? GO:0003735 ... P60493 30793894
    157 6o97:21 (2.75) BS01 rna ? GO:0003735 ... P60494 30793894
    158 6o97:21 (2.75) BS02 rna ? GO:0003735 ... P60494 30793894
    159 6o97:21 (2.75) BS03 MG ? GO:0003735 ... P60494 30793894
    160 6o97:22 (2.75) BS01 rna ? GO:0003735 ... Q5SHP6 30793894
    161 6o97:23 (2.75) BS01 rna ? GO:0003735 ... Q5SHQ6 30793894
    162 6o97:23 (2.75) BS02 rna ? GO:0003735 ... Q5SHQ6 30793894
    163 6o97:23 (2.75) BS03 MG ? GO:0003735 ... Q5SHQ6 30793894
    164 6o97:24 (2.75) BS01 rna ? GO:0003735 ... Q5SJE1 30793894
    165 6o97:24 (2.75) BS02 ZN ? GO:0003735 ... Q5SJE1 30793894
    166 6o97:25 (2.75) BS01 rna ? GO:0003735 ... P80339 30793894
    167 6o97:25 (2.75) BS02 MG ? GO:0003735 ... P80339 30793894
    168 6o97:25 (2.75) BS03 ZN ? GO:0003735 ... P80339 30793894
    169 6o97:26 (2.75) BS01 rna ? GO:0000049 ... P35871 30793894
    170 6o97:26 (2.75) BS02 ZN ? GO:0000049 ... P35871 30793894
    171 6o97:27 (2.75) BS01 rna ? GO:0003735 ... P80340 30793894
    172 6o97:27 (2.75) BS02 MG ? GO:0003735 ... P80340 30793894
    173 6o97:28 (2.75) BS01 rna ? GO:0003735 ... Q5SKU1 30793894
    174 6o97:29 (2.75) BS01 rna ? GO:0003735 ... Q5SHR2 30793894
    175 6o97:29 (2.75) BS02 ZN ? GO:0003735 ... Q5SHR2 30793894
    176 6o97:2D (2.75) BS01 rna ? GO:0002181 ... P60405 30793894
    177 6o97:2D (2.75) BS02 rna ? GO:0002181 ... P60405 30793894
    178 6o97:2D (2.75) BS03 MG ? GO:0002181 ... P60405 30793894
    179 6o97:2D (2.75) BS04 MG ? GO:0002181 ... P60405 30793894
    180 6o97:2D (2.75) BS05 MG ? GO:0002181 ... P60405 30793894
    181 6o97:2D (2.75) BS06 MG ? GO:0002181 ... P60405 30793894
    182 6o97:2E (2.75) BS01 rna ? GO:0003735 ... Q5SHN8 30793894
    183 6o97:2E (2.75) BS02 MG ? GO:0003735 ... Q5SHN8 30793894
    184 6o97:2F (2.75) BS01 rna ? GO:0003735 ... Q5SHN9 30793894
    185 6o97:2F (2.75) BS02 MG ? GO:0003735 ... Q5SHN9 30793894
    186 6o97:2F (2.75) BS03 MG ? GO:0003735 ... Q5SHN9 30793894
    187 6o97:2F (2.75) BS04 MG ? GO:0003735 ... Q5SHN9 30793894
    188 6o97:2G (2.75) BS01 rna ? GO:0000049 ... Q5SHQ0 30793894
    189 6o97:2G (2.75) BS02 rna ? GO:0000049 ... Q5SHQ0 30793894
    190 6o97:2G (2.75) BS03 rna ? GO:0000049 ... Q5SHQ0 30793894
    191 6o97:2H (2.75) BS01 rna ? GO:0002181 ... P0DOY8 30793894
    192 6o97:2I (2.75) BS01 rna ? GO:0003735 ... Q5SLQ1 30793894
    193 6o97:2N (2.75) BS01 rna ? GO:0003729 ... P60488 30793894
    194 6o97:2O (2.75) BS01 rna ? GO:0003735 ... Q5SHP8 30793894
    195 6o97:2O (2.75) BS02 rna ? GO:0003735 ... Q5SHP8 30793894
    196 6o97:2P (2.75) BS01 rna ? GO:0003735 ... Q5SHQ7 30793894
    197 6o97:2Q (2.75) BS01 rna ? GO:0000049 ... P60489 30793894
    198 6o97:2Q (2.75) BS02 rna ? GO:0000049 ... P60489 30793894
    199 6o97:2Q (2.75) BS03 rna ? GO:0000049 ... P60489 30793894
    200 6o97:2Q (2.75) BS04 MG ? GO:0000049 ... P60489 30793894
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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