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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6nlm:A (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    2 6nlm:A (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    3 6nlm:A (1.9) BS03 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    4 6nlm:B (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    5 6nlm:B (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    6 6nlm:B (1.9) BS03 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    7 6nlm:B (1.9) BS04 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    8 6nlm:C (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    9 6nlm:C (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    10 6nlm:C (1.9) BS03 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    11 6nlm:C (1.9) BS04 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    12 6nlm:D (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    13 6nlm:D (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    14 6nlm:D (1.9) BS03 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    15 6nlm:E (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    16 6nlm:E (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    17 6nlm:E (1.9) BS03 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    18 6nlm:E (1.9) BS04 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    19 6nlm:F (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    20 6nlm:F (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    21 6nlm:F (1.9) BS03 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    22 6nlm:F (1.9) BS04 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    23 6nlm:G (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    24 6nlm:G (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    25 6nlm:H (1.9) BS01 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    26 6nlm:H (1.9) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    27 6nlm:H (1.9) BS03 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    28 6nlm:I (1.9) BS01 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    29 6nlm:I (1.9) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    30 6nlm:I (1.9) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    31 6nlm:I (1.9) BS04 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    32 6nlm:J (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    33 6nlm:J (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    34 6nlm:J (1.9) BS03 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    35 6nlm:J (1.9) BS04 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    36 6nlm:K (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    37 6nlm:K (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    38 6nlm:K (1.9) BS03 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    39 6nlm:K (1.9) BS04 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    40 6nlm:L (1.9) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    41 6nlm:L (1.9) BS02 KT1 1.16.3.1 GO:0004322 ... Q9HY79 31038945 MOAD: Kd=5uM
    42 6nlm:L (1.9) BS03 HEM 1.16.3.1 GO:0004322 ... Q9HY79 31038945
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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