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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 269 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6nd5:10 (2.6) BS01 rna ? GO:0003735 ... P60493 30733327
    2 6nd5:10 (2.6) BS02 rna ? GO:0003735 ... P60493 30733327
    3 6nd5:10 (2.6) BS03 MG ? GO:0003735 ... P60493 30733327
    4 6nd5:10 (2.6) BS04 MG ? GO:0003735 ... P60493 30733327
    5 6nd5:11 (2.6) BS01 rna ? GO:0003735 ... P60494 30733327
    6 6nd5:11 (2.6) BS02 MG ? GO:0003735 ... P60494 30733327
    7 6nd5:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 30733327
    8 6nd5:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 30733327
    9 6nd5:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 30733327
    10 6nd5:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 30733327
    11 6nd5:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 30733327
    12 6nd5:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 30733327
    13 6nd5:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 30733327
    14 6nd5:15 (2.6) BS01 rna ? GO:0003735 ... P80339 30733327
    15 6nd5:15 (2.6) BS02 MG ? GO:0003735 ... P80339 30733327
    16 6nd5:15 (2.6) BS03 ZN ? GO:0003735 ... P80339 30733327
    17 6nd5:16 (2.6) BS01 rna ? GO:0000049 ... P35871 30733327
    18 6nd5:16 (2.6) BS02 MG ? GO:0000049 ... P35871 30733327
    19 6nd5:16 (2.6) BS03 MG ? GO:0000049 ... P35871 30733327
    20 6nd5:16 (2.6) BS04 ZN ? GO:0000049 ... P35871 30733327
    21 6nd5:17 (2.6) BS01 rna ? GO:0003735 ... P80340 30733327
    22 6nd5:17 (2.6) BS02 MG ? GO:0003735 ... P80340 30733327
    23 6nd5:17 (2.6) BS03 MG ? GO:0003735 ... P80340 30733327
    24 6nd5:17 (2.6) BS04 MG ? GO:0003735 ... P80340 30733327
    25 6nd5:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 30733327
    26 6nd5:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 30733327
    27 6nd5:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 30733327
    28 6nd5:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 30733327
    29 6nd5:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 30733327
    30 6nd5:1D (2.6) BS01 rna ? GO:0002181 ... P60405 30733327
    31 6nd5:1D (2.6) BS02 rna ? GO:0002181 ... P60405 30733327
    32 6nd5:1D (2.6) BS03 MG ? GO:0002181 ... P60405 30733327
    33 6nd5:1D (2.6) BS04 MG ? GO:0002181 ... P60405 30733327
    34 6nd5:1D (2.6) BS05 MG ? GO:0002181 ... P60405 30733327
    35 6nd5:1D (2.6) BS06 MG ? GO:0002181 ... P60405 30733327
    36 6nd5:1D (2.6) BS07 MG ? GO:0002181 ... P60405 30733327
    37 6nd5:1D (2.6) BS08 MG ? GO:0002181 ... P60405 30733327
    38 6nd5:1D (2.6) BS09 MG ? GO:0002181 ... P60405 30733327
    39 6nd5:1D (2.6) BS10 MG ? GO:0002181 ... P60405 30733327
    40 6nd5:1D (2.6) BS11 MG ? GO:0002181 ... P60405 30733327
    41 6nd5:1D (2.6) BS12 MG ? GO:0002181 ... P60405 30733327
    42 6nd5:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 30733327
    43 6nd5:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 30733327
    44 6nd5:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 30733327
    45 6nd5:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 30733327
    46 6nd5:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 30733327
    47 6nd5:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 30733327
    48 6nd5:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 30733327
    49 6nd5:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 30733327
    50 6nd5:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 30733327
    51 6nd5:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 30733327
    52 6nd5:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 30733327
    53 6nd5:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 30733327
    54 6nd5:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 30733327
    55 6nd5:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 30733327
    56 6nd5:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 30733327
    57 6nd5:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 30733327
    58 6nd5:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 30733327
    59 6nd5:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 30733327
    60 6nd5:1G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 30733327
    61 6nd5:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 30733327
    62 6nd5:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 30733327
    63 6nd5:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 30733327
    64 6nd5:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 30733327
    65 6nd5:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 30733327
    66 6nd5:1N (2.6) BS01 rna ? GO:0003729 ... P60488 30733327
    67 6nd5:1N (2.6) BS02 MG ? GO:0003729 ... P60488 30733327
    68 6nd5:1N (2.6) BS03 MG ? GO:0003729 ... P60488 30733327
    69 6nd5:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 30733327
    70 6nd5:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 30733327
    71 6nd5:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 30733327
    72 6nd5:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 30733327
    73 6nd5:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 30733327
    74 6nd5:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 30733327
    75 6nd5:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 30733327
    76 6nd5:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 30733327
    77 6nd5:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 30733327
    78 6nd5:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 30733327
    79 6nd5:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 30733327
    80 6nd5:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 30733327
    81 6nd5:1Q (2.6) BS03 rna ? GO:0000049 ... P60489 30733327
    82 6nd5:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 30733327
    83 6nd5:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 30733327
    84 6nd5:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 30733327
    85 6nd5:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 30733327
    86 6nd5:1Q (2.6) BS08 MG ? GO:0000049 ... P60489 30733327
    87 6nd5:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 30733327
    88 6nd5:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 30733327
    89 6nd5:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 30733327
    90 6nd5:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 30733327
    91 6nd5:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 30733327
    92 6nd5:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 30733327
    93 6nd5:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 30733327
    94 6nd5:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 30733327
    95 6nd5:1T (2.6) BS01 rna ? GO:0003735 ... P60490 30733327
    96 6nd5:1T (2.6) BS02 rna ? GO:0003735 ... P60490 30733327
    97 6nd5:1T (2.6) BS03 MG ? GO:0003735 ... P60490 30733327
    98 6nd5:1U (2.6) BS01 rna ? GO:0000027 ... P60491 30733327
    99 6nd5:1U (2.6) BS02 MG ? GO:0000027 ... P60491 30733327
    100 6nd5:1U (2.6) BS03 MG ? GO:0000027 ... P60491 30733327
    101 6nd5:1U (2.6) BS04 MG ? GO:0000027 ... P60491 30733327
    102 6nd5:1U (2.6) BS05 MG ? GO:0000027 ... P60491 30733327
    103 6nd5:1U (2.6) BS06 MG ? GO:0000027 ... P60491 30733327
    104 6nd5:1U (2.6) BS07 MG ? GO:0000027 ... P60491 30733327
    105 6nd5:1U (2.6) BS08 MG ? GO:0000027 ... P60491 30733327
    106 6nd5:1U (2.6) BS09 MG ? GO:0000027 ... P60491 30733327
    107 6nd5:1V (2.6) BS01 rna ? GO:0003723 ... P60492 30733327
    108 6nd5:1V (2.6) BS02 MG ? GO:0003723 ... P60492 30733327
    109 6nd5:1V (2.6) BS03 MG ? GO:0003723 ... P60492 30733327
    110 6nd5:1V (2.6) BS04 MG ? GO:0003723 ... P60492 30733327
    111 6nd5:1V (2.6) BS05 MG ? GO:0003723 ... P60492 30733327
    112 6nd5:1V (2.6) BS06 MG ? GO:0003723 ... P60492 30733327
    113 6nd5:1V (2.6) BS07 MG ? GO:0003723 ... P60492 30733327
    114 6nd5:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 30733327
    115 6nd5:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 30733327
    116 6nd5:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 30733327
    117 6nd5:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 30733327
    118 6nd5:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 30733327
    119 6nd5:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 30733327
    120 6nd5:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 30733327
    121 6nd5:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 30733327
    122 6nd5:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 30733327
    123 6nd5:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 30733327
    124 6nd5:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 30733327
    125 6nd5:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 30733327
    126 6nd5:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 30733327
    127 6nd5:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 30733327
    128 6nd5:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 30733327
    129 6nd5:1b (2.6) BS01 rna ? GO:0003735 ... P80371 30733327
    130 6nd5:1b (2.6) BS02 MG ? GO:0003735 ... P80371 30733327
    131 6nd5:1c (2.6) BS01 rna ? GO:0003676 ... P80372 30733327
    132 6nd5:1d (2.6) BS01 rna ? GO:0003723 ... P80373 30733327
    133 6nd5:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 30733327
    134 6nd5:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 30733327
    135 6nd5:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 30733327
    136 6nd5:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 30733327
    137 6nd5:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 30733327
    138 6nd5:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 30733327
    139 6nd5:1g (2.6) BS01 rna ? GO:0000028 ... P17291 30733327
    140 6nd5:1g (2.6) BS02 rna ? GO:0000028 ... P17291 30733327
    141 6nd5:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 30733327
    142 6nd5:1i (2.6) BS01 rna ? GO:0000049 ... P80374 30733327
    143 6nd5:1i (2.6) BS02 rna ? GO:0000049 ... P80374 30733327
    144 6nd5:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 30733327
    145 6nd5:1k (2.6) BS01 rna ? GO:0003735 ... P80376 30733327
    146 6nd5:1k (2.6) BS02 MG ? GO:0003735 ... P80376 30733327
    147 6nd5:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 30733327
    148 6nd5:1l (2.6) BS02 rna ? GO:0000049 ... Q5SHN3 30733327
    149 6nd5:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 30733327
    150 6nd5:1m (2.6) BS01 rna ? GO:0000049 ... P80377 30733327
    151 6nd5:1m (2.6) BS02 rna ? GO:0000049 ... P80377 30733327
    152 6nd5:1m (2.6) BS03 rna ? GO:0000049 ... P80377 30733327
    153 6nd5:1m (2.6) BS04 MG ? GO:0000049 ... P80377 30733327
    154 6nd5:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 30733327
    155 6nd5:1n (2.6) BS02 MG ? GO:0003735 ... P0DOY6 30733327
    156 6nd5:1n (2.6) BS03 ZN ? GO:0003735 ... P0DOY6 30733327
    157 6nd5:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 30733327
    158 6nd5:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 30733327
    159 6nd5:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 30733327
    160 6nd5:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 30733327
    161 6nd5:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 30733327
    162 6nd5:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 30733327
    163 6nd5:1t (2.6) BS01 rna ? GO:0003723 ... P80380 30733327
    164 6nd5:1t (2.6) BS02 MG ? GO:0003723 ... P80380 30733327
    165 6nd5:20 (2.6) BS01 rna ? GO:0003735 ... P60493 30733327
    166 6nd5:20 (2.6) BS02 rna ? GO:0003735 ... P60493 30733327
    167 6nd5:20 (2.6) BS03 rna ? GO:0003735 ... P60493 30733327
    168 6nd5:21 (2.6) BS01 rna ? GO:0003735 ... P60494 30733327
    169 6nd5:21 (2.6) BS02 rna ? GO:0003735 ... P60494 30733327
    170 6nd5:21 (2.6) BS03 MG ? GO:0003735 ... P60494 30733327
    171 6nd5:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 30733327
    172 6nd5:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 30733327
    173 6nd5:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 30733327
    174 6nd5:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 30733327
    175 6nd5:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 30733327
    176 6nd5:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 30733327
    177 6nd5:25 (2.6) BS01 rna ? GO:0003735 ... P80339 30733327
    178 6nd5:25 (2.6) BS02 ZN ? GO:0003735 ... P80339 30733327
    179 6nd5:26 (2.6) BS01 rna ? GO:0000049 ... P35871 30733327
    180 6nd5:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 30733327
    181 6nd5:27 (2.6) BS01 rna ? GO:0003735 ... P80340 30733327
    182 6nd5:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 30733327
    183 6nd5:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 30733327
    184 6nd5:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 30733327
    185 6nd5:2D (2.6) BS01 rna ? GO:0002181 ... P60405 30733327
    186 6nd5:2D (2.6) BS02 rna ? GO:0002181 ... P60405 30733327
    187 6nd5:2D (2.6) BS03 MG ? GO:0002181 ... P60405 30733327
    188 6nd5:2D (2.6) BS04 MG ? GO:0002181 ... P60405 30733327
    189 6nd5:2D (2.6) BS05 MG ? GO:0002181 ... P60405 30733327
    190 6nd5:2D (2.6) BS06 MG ? GO:0002181 ... P60405 30733327
    191 6nd5:2D (2.6) BS07 MG ? GO:0002181 ... P60405 30733327
    192 6nd5:2D (2.6) BS08 MG ? GO:0002181 ... P60405 30733327
    193 6nd5:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 30733327
    194 6nd5:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 30733327
    195 6nd5:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 30733327
    196 6nd5:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 30733327
    197 6nd5:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 30733327
    198 6nd5:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 30733327
    199 6nd5:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 30733327
    200 6nd5:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 30733327
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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