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BioLiP
Download all results in tab-seperated text for 110 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6mtc:A (3.4) BS01 rna ? GO:0002181 ... G1TT27 30355441
    2 6mtc:A (3.4) BS02 rna ? GO:0002181 ... G1TT27 30355441
    3 6mtc:AA (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    4 6mtc:B (3.4) BS01 rna ? GO:0003723 ... G1TL06 30355441
    5 6mtc:BB (3.4) BS01 rna ? GO:0003735 ... G1SS70 30355441
    6 6mtc:C (3.4) BS01 rna ? GO:0003735 ... G1SVW5 30355441
    7 6mtc:C (3.4) BS02 rna ? GO:0003735 ... G1SVW5 30355441
    8 6mtc:CC (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    9 6mtc:D (3.4) BS01 rna ? GO:0000027 ... P19949 30355441
    10 6mtc:D (3.4) BS02 rna ? GO:0000027 ... P19949 30355441
    11 6mtc:DD (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    12 6mtc:E (3.4) BS01 rna ? GO:0000027 ... G1SKF7 30355441
    13 6mtc:EE (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    14 6mtc:F (3.4) BS01 rna ? GO:0000463 ... G1SV32 30355441
    15 6mtc:F (3.4) BS02 rna ? GO:0000463 ... G1SV32 30355441
    16 6mtc:FF (3.4) BS01 rna ? GO:0000028 ... G1TFM5 30355441
    17 6mtc:G (3.4) BS01 rna N/A GO:0042254 ... N/A 30355441
    18 6mtc:G (3.4) BS02 rna N/A GO:0042254 ... N/A 30355441
    19 6mtc:GG (3.4) BS01 rna ? GO:0000082 ... G1TM55 30355441
    20 6mtc:H (3.4) BS01 rna ? GO:0002181 ... G1SWI6 30355441
    21 6mtc:HH (3.4) BS01 rna ? GO:0003735 ... G1SVB0 30355441
    22 6mtc:I (3.4) BS01 rna ? GO:0000027 ... B7NZQ2 30355441
    23 6mtc:I (3.4) BS02 rna ? GO:0000027 ... B7NZQ2 30355441
    24 6mtc:II (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    25 6mtc:II (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    26 6mtc:J (3.4) BS01 rna ? GO:0003723 ... G1TUB8 30355441
    27 6mtc:J (3.4) BS02 rna ? GO:0003723 ... G1TUB8 30355441
    28 6mtc:JJ (3.4) BS01 rna ? GO:0003723 ... B7NZS8 30355441
    29 6mtc:KK (3.4) BS01 rna ? N/A G1TPV3 30355441
    30 6mtc:L (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    31 6mtc:L (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    32 6mtc:LL (3.4) BS01 rna ? GO:0003735 ... G1TRM4 30355441
    33 6mtc:LL (3.4) BS02 MG ? GO:0003735 ... G1TRM4 30355441
    34 6mtc:M (3.4) BS01 rna ? GO:0003723 ... G1SZ12 30355441
    35 6mtc:MM (3.4) BS01 rna ? GO:0003735 ... G1SFR8 30355441
    36 6mtc:N (3.4) BS01 rna ? GO:0002181 ... G1T0C1 30355441
    37 6mtc:N (3.4) BS02 rna ? GO:0002181 ... G1T0C1 30355441
    38 6mtc:NN (3.4) BS01 rna ? GO:0003735 ... G1SP51 30355441
    39 6mtc:NN (3.4) BS02 rna ? GO:0003735 ... G1SP51 30355441
    40 6mtc:O (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    41 6mtc:OO (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    42 6mtc:P (3.4) BS01 rna ? GO:0003735 ... G1SCJ6 30355441
    43 6mtc:P (3.4) BS02 rna ? GO:0003735 ... G1SCJ6 30355441
    44 6mtc:PP (3.4) BS01 rna ? GO:0003723 ... G1U0Q2 30355441
    45 6mtc:Q (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    46 6mtc:QQ (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    47 6mtc:R (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    48 6mtc:R (3.4) BS02 rna N/A GO:0003723 ... N/A 30355441
    49 6mtc:RR (3.4) BS01 rna ? GO:0003735 ... G1TU13 30355441
    50 6mtc:S (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    51 6mtc:S (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    52 6mtc:SS (3.4) BS01 rna ? GO:0003676 ... G1TPG3 30355441
    53 6mtc:T (3.4) BS01 rna ? GO:0003735 ... G1SHQ2 30355441
    54 6mtc:T (3.4) BS02 rna ? GO:0003735 ... G1SHQ2 30355441
    55 6mtc:TT (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    56 6mtc:TT (3.4) BS02 MG N/A GO:0003735 ... N/A 30355441
    57 6mtc:U (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    58 6mtc:UU (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    59 6mtc:V (3.4) BS01 rna ? GO:0000122 ... G1T6D1 30355441
    60 6mtc:W (3.4) BS01 rna ? GO:0000027 ... G1SE28 30355441
    61 6mtc:W (3.4) BS02 rna ? GO:0000027 ... G1SE28 30355441
    62 6mtc:WW (3.4) BS01 rna ? GO:0003735 ... G1TG89 30355441
    63 6mtc:X (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    64 6mtc:X (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    65 6mtc:XX (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    66 6mtc:Y (3.4) BS01 rna ? GO:0002181 ... G1SQH0 30355441
    67 6mtc:Y (3.4) BS02 rna ? GO:0002181 ... G1SQH0 30355441
    68 6mtc:YY (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    69 6mtc:Z (3.4) BS01 rna ? GO:0003735 ... G1TXF6 30355441
    70 6mtc:ZZ (3.4) BS01 rna ? N/A G1TDB3 30355441
    71 6mtc:ZZ (3.4) BS02 rna ? N/A G1TDB3 30355441
    72 6mtc:a (3.4) BS01 rna ? GO:0003735 ... G1SNY0 30355441
    73 6mtc:aa (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    74 6mtc:aa (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    75 6mtc:b (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    76 6mtc:bb (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    77 6mtc:c (3.4) BS01 rna ? GO:0003723 ... G1TDL2 30355441
    78 6mtc:cc (3.4) BS01 rna ? GO:0000028 ... G1TIB4 30355441
    79 6mtc:d (3.4) BS01 rna ? GO:0003735 ... G1SHG0 30355441
    80 6mtc:dd (3.4) BS01 rna ? GO:0003735 ... G1U7M4 30355441
    81 6mtc:dd (3.4) BS02 ZN ? GO:0003735 ... G1U7M4 30355441
    82 6mtc:e (3.4) BS01 rna ? GO:0003735 ... G1TUN8 30355441
    83 6mtc:ee (3.4) BS01 rna ? GO:0003735 ... G1T8A2 30355441
    84 6mtc:f (3.4) BS01 rna ? GO:0000049 ... G1SF08 30355441
    85 6mtc:ff (3.4) BS01 rna ? GO:0003735 ... G1SK22 30355441
    86 6mtc:ff (3.4) BS02 ZN ? GO:0003735 ... G1SK22 30355441
    87 6mtc:g (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    88 6mtc:g (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    89 6mtc:gg (3.4) BS01 rna ? GO:0001891 ... G1SJB4 30355441
    90 6mtc:h (3.4) BS01 rna ? GO:0000463 ... G1SIT5 30355441
    91 6mtc:h (3.4) BS02 rna ? GO:0000463 ... G1SIT5 30355441
    92 6mtc:i (3.4) BS01 rna ? GO:0002181 ... G1TTQ5 30355441
    93 6mtc:j (3.4) BS01 rna ? GO:0003735 ... U3KPD5 30355441
    94 6mtc:j (3.4) BS02 rna ? GO:0003735 ... U3KPD5 30355441
    95 6mtc:j (3.4) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    96 6mtc:k (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    97 6mtc:l (3.4) BS01 rna ? GO:0003735 ... G1TTN1 30355441
    98 6mtc:l (3.4) BS02 rna ? GO:0003735 ... G1TTN1 30355441
    99 6mtc:m (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    100 6mtc:m (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    101 6mtc:o (3.4) BS01 rna ? GO:0003735 ... G1T040 30355441
    102 6mtc:o (3.4) BS02 rna ? GO:0003735 ... G1T040 30355441
    103 6mtc:o (3.4) BS03 ZN ? GO:0003735 ... G1T040 30355441
    104 6mtc:p (3.4) BS01 rna ? GO:0003735 ... G1SY53 30355441
    105 6mtc:p (3.4) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    106 6mtc:r (3.4) BS01 rna ? GO:0003735 ... G1U7L1 30355441
    107 6mtc:u (3.4) BS01 rna ? GO:0000470 ... G1SKZ8 30355441
    108 6mtc:u (3.4) BS02 rna ? GO:0000470 ... G1SKZ8 30355441
    109 6mtc:v (3.4) BS01 rna N/A N/A N/A 30355441
    110 6mtc:v (3.4) BS02 rna N/A N/A N/A 30355441
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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