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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6mpi:B (3.33) BS01 rna ? GO:0003735 ... P80371 31945376
    2 6mpi:C (3.33) BS01 rna ? GO:0003676 ... P80372 31945376
    3 6mpi:D (3.33) BS01 rna ? GO:0003723 ... P80373 31945376
    4 6mpi:E (3.33) BS01 rna ? GO:0003723 ... Q5SHQ5 31945376
    5 6mpi:F (3.33) BS01 rna ? GO:0003735 ... Q5SLP8 31945376
    6 6mpi:G (3.33) BS01 rna ? GO:0000028 ... P17291 31945376
    7 6mpi:H (3.33) BS01 rna ? GO:0003735 ... P0DOY9 31945376
    8 6mpi:I (3.33) BS01 rna ? GO:0000049 ... P80374 31945376
    9 6mpi:J (3.33) BS01 rna ? GO:0000049 ... Q5SHN7 31945376
    10 6mpi:K (3.33) BS01 rna ? GO:0003735 ... P80376 31945376
    11 6mpi:L (3.33) BS01 rna ? GO:0000049 ... Q5SHN3 31945376
    12 6mpi:M (3.33) BS01 rna ? GO:0000049 ... P80377 31945376
    13 6mpi:N (3.33) BS01 rna ? GO:0003735 ... P0DOY6 31945376
    14 6mpi:O (3.33) BS01 rna ? GO:0003735 ... Q5SJ76 31945376
    15 6mpi:P (3.33) BS01 rna ? GO:0003735 ... Q5SJH3 31945376
    16 6mpi:Q (3.33) BS01 rna ? GO:0003735 ... P0DOY7 31945376
    17 6mpi:R (3.33) BS01 rna ? GO:0003735 ... Q5SLQ0 31945376
    18 6mpi:S (3.33) BS01 rna ? GO:0000028 ... Q5SHP2 31945376
    19 6mpi:T (3.33) BS01 rna ? GO:0003723 ... P80380 31945376
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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