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BioLiP
Download all results in tab-seperated text for 81 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6m62:4 (3.2) BS01 rna 3.-.-.- GO:0000055 ... Q03862 32719344
    2 6m62:4 (3.2) BS02 rna 3.-.-.- GO:0000055 ... Q03862 32719344
    3 6m62:5 (3.2) BS01 rna ? GO:0003674 ... P53188 32719344
    4 6m62:5 (3.2) BS02 rna ? GO:0003674 ... P53188 32719344
    5 6m62:A (3.2) BS01 rna ? GO:0002181 ... P0CX45 32719344
    6 6m62:B (3.2) BS01 rna ? GO:0000027 ... P14126 32719344
    7 6m62:C (3.2) BS01 rna ? GO:0002181 ... P10664 32719344
    8 6m62:C (3.2) BS02 rna ? GO:0002181 ... P10664 32719344
    9 6m62:D (3.2) BS01 rna ? GO:0000027 ... P26321 32719344
    10 6m62:D (3.2) BS02 rna ? GO:0000027 ... P26321 32719344
    11 6m62:E (3.2) BS01 rna ? GO:0000027 ... Q02326 32719344
    12 6m62:F (3.2) BS01 rna ? GO:0000463 ... P05737 32719344
    13 6m62:G (3.2) BS01 rna ? GO:0000470 ... P17076 32719344
    14 6m62:G (3.2) BS02 rna ? GO:0000470 ... P17076 32719344
    15 6m62:G (3.2) BS03 rna ? GO:0000470 ... P17076 32719344
    16 6m62:H (3.2) BS01 rna ? GO:0002181 ... P05738 32719344
    17 6m62:I (3.2) BS01 rna ? GO:0000055 ... Q08004 32719344
    18 6m62:I (3.2) BS02 ZN ? GO:0000055 ... Q08004 32719344
    19 6m62:J (3.2) BS01 rna ? GO:0000027 ... P0C0W9 32719344
    20 6m62:J (3.2) BS02 rna ? GO:0000027 ... P0C0W9 32719344
    21 6m62:K (3.2) BS01 rna ? GO:0000462 ... P38779 32719344
    22 6m62:L (3.2) BS01 rna ? GO:0002181 ... Q12690 32719344
    23 6m62:L (3.2) BS02 rna ? GO:0002181 ... Q12690 32719344
    24 6m62:M (3.2) BS01 rna ? GO:0000027 ... P36105 32719344
    25 6m62:N (3.2) BS01 rna ? GO:0002181 ... P05748 32719344
    26 6m62:N (3.2) BS02 rna ? GO:0002181 ... P05748 32719344
    27 6m62:O (3.2) BS01 rna ? GO:0000470 ... P26784 32719344
    28 6m62:P (3.2) BS01 rna ? GO:0000448 ... P05740 32719344
    29 6m62:P (3.2) BS02 rna ? GO:0000448 ... P05740 32719344
    30 6m62:Q (3.2) BS01 rna ? GO:0002181 ... P0CX49 32719344
    31 6m62:R (3.2) BS01 rna ? GO:0002181 ... P0CX82 32719344
    32 6m62:S (3.2) BS01 rna ? GO:0002181 ... P0CX23 32719344
    33 6m62:T (3.2) BS01 rna ? GO:0002181 ... Q02753 32719344
    34 6m62:U (3.2) BS01 rna ? GO:0002181 ... P05749 32719344
    35 6m62:V (3.2) BS01 rna ? GO:0002181 ... P0CX41 32719344
    36 6m62:W (3.2) BS01 rna ? GO:0000027 ... P33201 32719344
    37 6m62:X (3.2) BS01 rna ? GO:0000027 ... P04456 32719344
    38 6m62:X (3.2) BS02 rna ? GO:0000027 ... P04456 32719344
    39 6m62:Y (3.2) BS01 rna ? GO:0002181 ... P05743 32719344
    40 6m62:Y (3.2) BS02 rna ? GO:0002181 ... P05743 32719344
    41 6m62:Z (3.2) BS01 rna ? GO:0002181 ... P0C2H6 32719344
    42 6m62:a (3.2) BS01 rna ? GO:0002181 ... P02406 32719344
    43 6m62:b (3.2) BS01 rna ? GO:0000054 ... Q02892 32719344
    44 6m62:b (3.2) BS02 rna ? GO:0000054 ... Q02892 32719344
    45 6m62:b (3.2) BS03 GTP ? GO:0000054 ... Q02892 32719344
    46 6m62:c (3.2) BS01 rna ? GO:0002181 ... P14120 32719344
    47 6m62:d (3.2) BS01 rna ? GO:0002181 ... P0C2H8 32719344
    48 6m62:e (3.2) BS01 rna ? GO:0002181 ... P38061 32719344
    49 6m62:f (3.2) BS01 rna ? GO:0000027 ... P05744 32719344
    50 6m62:g (3.2) BS01 rna ? GO:0002181 ... P87262 32719344
    51 6m62:h (3.2) BS01 rna ? GO:0000463 ... P0CX84 32719344
    52 6m62:h (3.2) BS02 rna ? GO:0000463 ... P0CX84 32719344
    53 6m62:i (3.2) BS01 rna ? GO:0002181 ... P05745 32719344
    54 6m62:j (3.2) BS01 rna ? GO:0000448 ... P49166 32719344
    55 6m62:j (3.2) BS02 rna ? GO:0000448 ... P49166 32719344
    56 6m62:j (3.2) BS03 ZN ? GO:0000448 ... P49166 32719344
    57 6m62:k (3.2) BS01 rna ? GO:0002181 ... P49167 32719344
    58 6m62:l (3.2) BS01 rna ? GO:0002181 ... P04650 32719344
    59 6m62:l (3.2) BS02 rna ? GO:0002181 ... P04650 32719344
    60 6m62:m (3.2) BS01 rna ? GO:0000055 ... P53742 32719344
    61 6m62:m (3.2) BS02 GTP ? GO:0000055 ... P53742 32719344
    62 6m62:m (3.2) BS03 MG ? GO:0000055 ... P53742 32719344
    63 6m62:n (3.2) BS01 rna ? GO:0000462 ... P53261 32719344
    64 6m62:n (3.2) BS02 rna ? GO:0000462 ... P53261 32719344
    65 6m62:o (3.2) BS01 rna ? GO:0000463 ... P53927 32719344
    66 6m62:p (3.2) BS01 rna ? GO:0002181 ... P0CX25 32719344
    67 6m62:p (3.2) BS02 ZN ? GO:0002181 ... P0CX25 32719344
    68 6m62:q (3.2) BS01 rna ? GO:0000027 ... Q12080 32719344
    69 6m62:q (3.2) BS02 rna ? GO:0000027 ... Q12080 32719344
    70 6m62:r (3.2) BS01 rna ? GO:0000460 ... P40078 32719344
    71 6m62:s (3.2) BS01 rna ? GO:0000055 ... P40010 32719344
    72 6m62:t (3.2) BS01 rna ? GO:0000463 ... P40693 32719344
    73 6m62:t (3.2) BS02 rna ? GO:0000463 ... P40693 32719344
    74 6m62:t (3.2) BS03 rna ? GO:0000463 ... P40693 32719344
    75 6m62:u (3.2) BS01 rna ? GO:0001671 ... Q07915 32719344
    76 6m62:u (3.2) BS02 ZN ? GO:0001671 ... Q07915 32719344
    77 6m62:v (3.2) BS01 rna ? GO:0000027 ... P36160 32719344
    78 6m62:v (3.2) BS02 rna ? GO:0000027 ... P36160 32719344
    79 6m62:w (3.2) BS01 rna ? GO:0000055 ... Q08746 32719344
    80 6m62:y (3.2) BS01 rna ? GO:0000054 ... Q12522 32719344
    81 6m62:z (3.2) BS01 rna ? GO:0003674 ... P38202 32719344
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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