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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6lu8:3 (3.13) BS01 rna ? GO:0000055 ... Q96D46 32669547
    2 6lu8:4 (3.13) BS01 peptide ? GO:0000079 ... Q9BZE4 32669547
    3 6lu8:4 (3.13) BS02 rna ? GO:0000079 ... Q9BZE4 32669547
    4 6lu8:4 (3.13) BS03 rna ? GO:0000079 ... Q9BZE4 32669547
    5 6lu8:6 (3.13) BS01 rna ? GO:0000054 ... P56537 32669547
    6 6lu8:7 (3.13) BS01 rna ? GO:0003735 ... Q9UHA3 32669547
    7 6lu8:9 (3.13) BS01 rna ? GO:0003676 ... O00488 32669547
    8 6lu8:B (3.13) BS01 rna ? GO:0002181 ... P39023 32669547
    9 6lu8:C (3.13) BS01 rna ? GO:0002181 ... P47914 32669547
    10 6lu8:D (3.13) BS01 rna ? GO:0002181 ... P36578 32669547
    11 6lu8:D (3.13) BS02 rna ? GO:0002181 ... P36578 32669547
    12 6lu8:E (3.13) BS01 rna ? GO:0002181 ... P62888 32669547
    13 6lu8:F (3.13) BS01 rna ? GO:0002181 ... P49207 32669547
    14 6lu8:F (3.13) BS02 MG ? GO:0002181 ... P49207 32669547
    15 6lu8:G (3.13) BS01 rna ? GO:0000470 ... P62424 32669547
    16 6lu8:G (3.13) BS02 rna ? GO:0000470 ... P62424 32669547
    17 6lu8:H (3.13) BS01 rna ? GO:0000463 ... P42766 32669547
    18 6lu8:H (3.13) BS02 rna ? GO:0000463 ... P42766 32669547
    19 6lu8:I (3.13) BS01 rna ? GO:0002181 ... P32969 32669547
    20 6lu8:K (3.13) BS01 rna ? GO:0002181 ... Q9Y3U8 32669547
    21 6lu8:L (3.13) BS01 rna ? GO:0002181 ... P46776 32669547
    22 6lu8:M (3.13) BS01 rna ? GO:0002181 ... P61927 32669547
    23 6lu8:M (3.13) BS02 rna ? GO:0002181 ... P61927 32669547
    24 6lu8:N (3.13) BS01 rna ? GO:0000027 ... P62913 32669547
    25 6lu8:N (3.13) BS02 rna ? GO:0000027 ... P62913 32669547
    26 6lu8:O (3.13) BS01 rna ? GO:0001501 ... P63173 32669547
    27 6lu8:P (3.13) BS01 rna ? GO:0002181 ... P62891 32669547
    28 6lu8:P (3.13) BS02 rna ? GO:0002181 ... P62891 32669547
    29 6lu8:Q (3.13) BS01 rna ? GO:0001824 ... P26373 32669547
    30 6lu8:Q (3.13) BS02 rna ? GO:0001824 ... P26373 32669547
    31 6lu8:R (3.13) BS01 rna ? GO:0005515 ... Q96EY4 32669547
    32 6lu8:R (3.13) BS02 rna ? GO:0005515 ... Q96EY4 32669547
    33 6lu8:S (3.13) BS01 rna ? GO:0002181 ... P50914 32669547
    34 6lu8:U (3.13) BS01 rna ? GO:0002181 ... P61313 32669547
    35 6lu8:U (3.13) BS02 rna ? GO:0002181 ... P61313 32669547
    36 6lu8:V (3.13) BS01 rna ? GO:0002181 ... P40429 32669547
    37 6lu8:W (3.13) BS01 rna ? GO:0002181 ... P83881 32669547
    38 6lu8:X (3.13) BS01 rna ? GO:0002181 ... P61513 32669547
    39 6lu8:Y (3.13) BS01 rna ? GO:0002181 ... P18621 32669547
    40 6lu8:Y (3.13) BS02 rna ? GO:0002181 ... P18621 32669547
    41 6lu8:Z (3.13) BS01 rna ? GO:0002181 ... Q07020 32669547
    42 6lu8:a (3.13) BS01 rna ? GO:0002181 ... P84098 32669547
    43 6lu8:b (3.13) BS01 rna ? GO:0002181 ... Q02543 32669547
    44 6lu8:b (3.13) BS02 rna ? GO:0002181 ... Q02543 32669547
    45 6lu8:c (3.13) BS01 rna ? GO:0002181 ... P46778 32669547
    46 6lu8:d (3.13) BS01 rna ? GO:0002181 ... P35268 32669547
    47 6lu8:e (3.13) BS01 rna ? GO:0000122 ... P62829 32669547
    48 6lu8:e (3.13) BS02 MG ? GO:0000122 ... P62829 32669547
    49 6lu8:g (3.13) BS01 rna ? GO:0000027 ... P62750 32669547
    50 6lu8:g (3.13) BS02 rna ? GO:0000027 ... P62750 32669547
    51 6lu8:h (3.13) BS01 rna ? GO:0002181 ... P61254 32669547
    52 6lu8:h (3.13) BS02 rna ? GO:0002181 ... P61254 32669547
    53 6lu8:i (3.13) BS01 rna ? GO:0002181 ... P61353 32669547
    54 6lu8:j (3.13) BS01 rna ? GO:0002181 ... P62899 32669547
    55 6lu8:k (3.13) BS01 rna ? GO:0002181 ... P62910 32669547
    56 6lu8:k (3.13) BS02 MG ? GO:0002181 ... P62910 32669547
    57 6lu8:l (3.13) BS01 rna ? GO:0002181 ... P46779 32669547
    58 6lu8:m (3.13) BS01 rna ? GO:0002181 ... P62917 32669547
    59 6lu8:m (3.13) BS02 MG ? GO:0002181 ... P62917 32669547
    60 6lu8:n (3.13) BS01 rna ? GO:0000049 ... P18077 32669547
    61 6lu8:n (3.13) BS02 MG ? GO:0000049 ... P18077 32669547
    62 6lu8:o (3.13) BS01 rna ? GO:0000027 ... Q02878 32669547
    63 6lu8:p (3.13) BS01 rna ? GO:0000463 ... P18124 32669547
    64 6lu8:p (3.13) BS02 rna ? GO:0000463 ... P18124 32669547
    65 6lu8:r (3.13) BS01 rna ? GO:0000027 ... P46777 32669547
    66 6lu8:r (3.13) BS02 rna ? GO:0000027 ... P46777 32669547
    67 6lu8:z (3.13) BS01 rna ? GO:0001099 ... Q9BRT6 32669547
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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