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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6lkq:0 (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    2 6lkq:1 (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    3 6lkq:1 (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    4 6lkq:2 (3.1) BS01 rna ? GO:0003735 ... A0A037Y8L6 32341159
    5 6lkq:3 (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    6 6lkq:3 (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    7 6lkq:4 (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    8 6lkq:5 (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    9 6lkq:5 (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    10 6lkq:6 (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    11 6lkq:6 (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    12 6lkq:8 (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    13 6lkq:9 (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    14 6lkq:A (3.1) BS01 rna ? GO:0003735 ... C3TPN2 32341159
    15 6lkq:B (3.1) BS01 rna N/A GO:0003676 ... N/A 32341159
    16 6lkq:C (3.1) BS01 rna ? GO:0003723 ... A0A4P8BV83 32341159
    17 6lkq:D (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    18 6lkq:E (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    19 6lkq:F (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    20 6lkq:G (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    21 6lkq:H (3.1) BS01 rna ? GO:0003723 ... D8A919 32341159
    22 6lkq:I (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    23 6lkq:J (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    24 6lkq:K (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    25 6lkq:K (3.1) BS02 peptide N/A GO:0003735 ... N/A 32341159
    26 6lkq:L (3.1) BS01 rna N/A GO:0003676 ... N/A 32341159
    27 6lkq:M (3.1) BS01 rna ? GO:0003735 ... A0A090BZT4 32341159
    28 6lkq:N (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    29 6lkq:N (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    30 6lkq:O (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    31 6lkq:P (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    32 6lkq:Q (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    33 6lkq:R (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    34 6lkq:S (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    35 6lkq:T (3.1) BS01 rna ? GO:0003735 ... A0A5C9AJ78 32341159
    36 6lkq:U (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    37 6lkq:V (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    38 6lkq:W (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    39 6lkq:X (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    40 6lkq:X (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    41 6lkq:Y (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    42 6lkq:Z (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    43 6lkq:a (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    44 6lkq:b (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    45 6lkq:c (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    46 6lkq:d (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    47 6lkq:d (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    48 6lkq:e (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    49 6lkq:f (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    50 6lkq:g (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    51 6lkq:h (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    52 6lkq:h (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    53 6lkq:i (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    54 6lkq:j (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    55 6lkq:k (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    56 6lkq:l (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    57 6lkq:m (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    58 6lkq:n (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    59 6lkq:v (3.1) BS01 rna ? GO:0003924 ... C3SE77 32341159
    60 6lkq:v (3.1) BS02 rna ? GO:0003924 ... C3SE77 32341159
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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