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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6l7o:A (3.2) BS01 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    2 6l7o:A (3.2) BS02 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    3 6l7o:A (3.2) BS03 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    4 6l7o:B (3.2) BS01 PQN 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    5 6l7o:B (3.2) BS02 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    6 6l7o:B (3.2) BS03 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    7 6l7o:B (3.2) BS04 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    8 6l7o:B (3.2) BS05 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    9 6l7o:B (3.2) BS06 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    10 6l7o:B (3.2) BS07 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    11 6l7o:B (3.2) BS08 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    12 6l7o:C (3.2) BS01 AJP 7.1.1.- GO:0008137 ... Q8DJ02 32060291
    13 6l7o:C (3.2) BS02 AJP 7.1.1.- GO:0008137 ... Q8DJ02 32060291
    14 6l7o:D (3.2) BS01 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    15 6l7o:D (3.2) BS02 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    16 6l7o:D (3.2) BS03 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    17 6l7o:D (3.2) BS04 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    18 6l7o:D (3.2) BS05 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    19 6l7o:D (3.2) BS06 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    20 6l7o:D (3.2) BS07 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    21 6l7o:D (3.2) BS08 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    22 6l7o:D (3.2) BS09 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    23 6l7o:E (3.2) BS01 AJP 7.1.1.- GO:0009579 ... Q8DL29 32060291
    24 6l7o:F (3.2) BS01 AJP ? GO:0003954 ... Q8DKX9 32060291
    25 6l7o:F (3.2) BS02 AJP ? GO:0003954 ... Q8DKX9 32060291
    26 6l7o:F (3.2) BS03 AJP ? GO:0003954 ... Q8DKX9 32060291
    27 6l7o:F (3.2) BS04 AJP ? GO:0003954 ... Q8DKX9 32060291
    28 6l7o:F (3.2) BS05 AJP ? GO:0003954 ... Q8DKX9 32060291
    29 6l7o:F (3.2) BS06 AJP ? GO:0003954 ... Q8DKX9 32060291
    30 6l7o:F (3.2) BS07 AJP ? GO:0003954 ... Q8DKX9 32060291
    31 6l7o:F (3.2) BS08 AJP ? GO:0003954 ... Q8DKX9 32060291
    32 6l7o:F (3.2) BS09 AJP ? GO:0003954 ... Q8DKX9 32060291
    33 6l7o:F (3.2) BS10 AJP ? GO:0003954 ... Q8DKX9 32060291
    34 6l7o:G (3.2) BS01 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    35 6l7o:G (3.2) BS02 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    36 6l7o:G (3.2) BS03 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    37 6l7o:G (3.2) BS04 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    38 6l7o:G (3.2) BS05 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    39 6l7o:G (3.2) BS06 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    40 6l7o:I (3.2) BS01 SF4 7.1.1.- GO:0005506 ... Q8DL31 32060291
    41 6l7o:I (3.2) BS02 SF4 7.1.1.- GO:0005506 ... Q8DL31 32060291
    42 6l7o:K (3.2) BS01 SF4 7.1.1.- GO:0005506 ... Q8DKZ4 32060291
    43 6l7o:Q (3.2) BS01 AJP ? GO:0016020 ... V5V791 32060291
    44 6l7o:Q (3.2) BS02 AJP ? GO:0016020 ... V5V791 32060291
    45 6l7o:Q (3.2) BS03 AJP ? GO:0016020 ... V5V791 32060291
    46 6l7o:R (3.2) BS01 FES ? GO:0005515 ... P0A3C9 32060291
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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