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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6l49:A (18.9) BS01 dna ? GO:0000132 ... P49450 31711756
    2 6l49:A (18.9) BS02 dna ? GO:0000132 ... P49450 31711756
    3 6l49:B (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    4 6l49:B (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    5 6l49:C (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    6 6l49:C (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    7 6l49:D (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    8 6l49:D (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    9 6l49:E (18.9) BS01 dna ? GO:0000132 ... P49450 31711756
    10 6l49:E (18.9) BS02 dna ? GO:0000132 ... P49450 31711756
    11 6l49:F (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    12 6l49:F (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    13 6l49:G (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    14 6l49:G (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    15 6l49:H (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    16 6l49:H (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    17 6l49:K (18.9) BS01 dna ? GO:0000786 ... P68431 31711756
    18 6l49:K (18.9) BS02 dna ? GO:0000786 ... P68431 31711756
    19 6l49:L (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    20 6l49:L (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    21 6l49:M (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    22 6l49:M (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    23 6l49:N (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    24 6l49:N (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    25 6l49:O (18.9) BS01 dna ? GO:0000786 ... P68431 31711756
    26 6l49:O (18.9) BS02 dna ? GO:0000786 ... P68431 31711756
    27 6l49:P (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    28 6l49:P (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    29 6l49:Q (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    30 6l49:Q (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    31 6l49:R (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    32 6l49:R (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    33 6l49:S (18.9) BS01 dna ? GO:0000786 ... P68431 31711756
    34 6l49:S (18.9) BS02 dna ? GO:0000786 ... P68431 31711756
    35 6l49:T (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    36 6l49:T (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    37 6l49:U (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    38 6l49:U (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    39 6l49:V (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    40 6l49:V (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    41 6l49:W (18.9) BS01 dna ? GO:0000786 ... P68431 31711756
    42 6l49:W (18.9) BS02 dna ? GO:0000786 ... P68431 31711756
    43 6l49:X (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    44 6l49:X (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    45 6l49:Y (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    46 6l49:Y (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    47 6l49:Z (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    48 6l49:Z (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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