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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kiu:A (3.2) BS01 dna ? GO:0000786 ... P84233 31485071
    2 6kiu:A (3.2) BS02 dna ? GO:0000786 ... P84233 31485071
    3 6kiu:B (3.2) BS01 dna ? GO:0000786 ... P62799 31485071
    4 6kiu:C (3.2) BS01 dna ? GO:0000786 ... P06897 31485071
    5 6kiu:D (3.2) BS01 dna ? GO:0000786 ... P02281 31485071
    6 6kiu:E (3.2) BS01 dna ? GO:0000786 ... P84233 31485071
    7 6kiu:E (3.2) BS02 dna ? GO:0000786 ... P84233 31485071
    8 6kiu:F (3.2) BS01 dna ? GO:0000786 ... P62799 31485071
    9 6kiu:H (3.2) BS01 dna ? GO:0000786 ... P02281 31485071
    10 6kiu:H (3.2) BS02 dna ? GO:0000786 ... P02281 31485071
    11 6kiu:K (3.2) BS01 SAH 2.1.1.-
    2.1.1.364    		 N/A Q03164 31485071 BindingDB: IC50=2300nM
    12 6kiu:K (3.2) BS02 ZN 2.1.1.-
    2.1.1.364    		 N/A Q03164 31485071
    13 6kiu:K (3.2) BS03 LYS 2.1.1.-
    2.1.1.364    		 N/A Q03164 31485071
    14 6kiu:K (3.2) BS04 GLN 2.1.1.-
    2.1.1.364    		 N/A Q03164 31485071
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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