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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 756 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kig:1 (2.9) BS01 CLA ? GO:0009521 ... P15347 32042157
    2 6kig:1 (2.9) BS02 CLA ? GO:0009521 ... P15347 32042157
    3 6kig:1 (2.9) BS03 CLA ? GO:0009521 ... P15347 32042157
    4 6kig:1 (2.9) BS04 CLA ? GO:0009521 ... P15347 32042157
    5 6kig:1 (2.9) BS05 CLA ? GO:0009521 ... P15347 32042157
    6 6kig:1 (2.9) BS06 CLA ? GO:0009521 ... P15347 32042157
    7 6kig:1 (2.9) BS07 CLA ? GO:0009521 ... P15347 32042157
    8 6kig:1 (2.9) BS08 CLA ? GO:0009521 ... P15347 32042157
    9 6kig:1 (2.9) BS09 CLA ? GO:0009521 ... P15347 32042157
    10 6kig:1 (2.9) BS10 CLA ? GO:0009521 ... P15347 32042157
    11 6kig:1 (2.9) BS11 CLA ? GO:0009521 ... P15347 32042157
    12 6kig:1 (2.9) BS12 CLA ? GO:0009521 ... P15347 32042157
    13 6kig:1 (2.9) BS13 CLA ? GO:0009521 ... P15347 32042157
    14 6kig:1 (2.9) BS14 CLA ? GO:0009521 ... P15347 32042157
    15 6kig:1 (2.9) BS15 CLA ? GO:0009521 ... P15347 32042157
    16 6kig:1 (2.9) BS16 CLA ? GO:0009521 ... P15347 32042157
    17 6kig:1 (2.9) BS17 CLA ? GO:0009521 ... P15347 32042157
    18 6kig:1 (2.9) BS18 CLA ? GO:0009521 ... P15347 32042157
    19 6kig:1 (2.9) BS19 CLA ? GO:0009521 ... P15347 32042157
    20 6kig:1 (2.9) BS20 CLA ? GO:0009521 ... P15347 32042157
    21 6kig:2 (2.9) BS01 CLA ? GO:0009521 ... P15347 32042157
    22 6kig:2 (2.9) BS02 CLA ? GO:0009521 ... P15347 32042157
    23 6kig:2 (2.9) BS03 CLA ? GO:0009521 ... P15347 32042157
    24 6kig:2 (2.9) BS04 CLA ? GO:0009521 ... P15347 32042157
    25 6kig:2 (2.9) BS05 CLA ? GO:0009521 ... P15347 32042157
    26 6kig:2 (2.9) BS06 CLA ? GO:0009521 ... P15347 32042157
    27 6kig:2 (2.9) BS07 CLA ? GO:0009521 ... P15347 32042157
    28 6kig:2 (2.9) BS08 CLA ? GO:0009521 ... P15347 32042157
    29 6kig:2 (2.9) BS09 CLA ? GO:0009521 ... P15347 32042157
    30 6kig:2 (2.9) BS10 CLA ? GO:0009521 ... P15347 32042157
    31 6kig:2 (2.9) BS11 CLA ? GO:0009521 ... P15347 32042157
    32 6kig:2 (2.9) BS12 CLA ? GO:0009521 ... P15347 32042157
    33 6kig:2 (2.9) BS13 CLA ? GO:0009521 ... P15347 32042157
    34 6kig:2 (2.9) BS14 CLA ? GO:0009521 ... P15347 32042157
    35 6kig:2 (2.9) BS15 CLA ? GO:0009521 ... P15347 32042157
    36 6kig:2 (2.9) BS16 CLA ? GO:0009521 ... P15347 32042157
    37 6kig:2 (2.9) BS17 CLA ? GO:0009521 ... P15347 32042157
    38 6kig:2 (2.9) BS18 CLA ? GO:0009521 ... P15347 32042157
    39 6kig:2 (2.9) BS19 CLA ? GO:0009521 ... P15347 32042157
    40 6kig:2 (2.9) BS20 CLA ? GO:0009521 ... P15347 32042157
    41 6kig:3 (2.9) BS01 CLA ? GO:0009521 ... P15347 32042157
    42 6kig:3 (2.9) BS02 CLA ? GO:0009521 ... P15347 32042157
    43 6kig:3 (2.9) BS03 CLA ? GO:0009521 ... P15347 32042157
    44 6kig:3 (2.9) BS04 CLA ? GO:0009521 ... P15347 32042157
    45 6kig:3 (2.9) BS05 CLA ? GO:0009521 ... P15347 32042157
    46 6kig:3 (2.9) BS06 CLA ? GO:0009521 ... P15347 32042157
    47 6kig:3 (2.9) BS07 CLA ? GO:0009521 ... P15347 32042157
    48 6kig:3 (2.9) BS08 CLA ? GO:0009521 ... P15347 32042157
    49 6kig:3 (2.9) BS09 CLA ? GO:0009521 ... P15347 32042157
    50 6kig:3 (2.9) BS10 CLA ? GO:0009521 ... P15347 32042157
    51 6kig:3 (2.9) BS11 CLA ? GO:0009521 ... P15347 32042157
    52 6kig:3 (2.9) BS12 CLA ? GO:0009521 ... P15347 32042157
    53 6kig:3 (2.9) BS13 CLA ? GO:0009521 ... P15347 32042157
    54 6kig:3 (2.9) BS14 CLA ? GO:0009521 ... P15347 32042157
    55 6kig:3 (2.9) BS15 CLA ? GO:0009521 ... P15347 32042157
    56 6kig:3 (2.9) BS16 CLA ? GO:0009521 ... P15347 32042157
    57 6kig:3 (2.9) BS17 CLA ? GO:0009521 ... P15347 32042157
    58 6kig:3 (2.9) BS18 CLA ? GO:0009521 ... P15347 32042157
    59 6kig:4 (2.9) BS01 CLA ? GO:0009521 ... P15347 32042157
    60 6kig:4 (2.9) BS02 CLA ? GO:0009521 ... P15347 32042157
    61 6kig:4 (2.9) BS03 CLA ? GO:0009521 ... P15347 32042157
    62 6kig:4 (2.9) BS04 CLA ? GO:0009521 ... P15347 32042157
    63 6kig:4 (2.9) BS05 CLA ? GO:0009521 ... P15347 32042157
    64 6kig:4 (2.9) BS06 CLA ? GO:0009521 ... P15347 32042157
    65 6kig:4 (2.9) BS07 CLA ? GO:0009521 ... P15347 32042157
    66 6kig:4 (2.9) BS08 CLA ? GO:0009521 ... P15347 32042157
    67 6kig:4 (2.9) BS09 CLA ? GO:0009521 ... P15347 32042157
    68 6kig:4 (2.9) BS10 CLA ? GO:0009521 ... P15347 32042157
    69 6kig:4 (2.9) BS11 CLA ? GO:0009521 ... P15347 32042157
    70 6kig:4 (2.9) BS12 CLA ? GO:0009521 ... P15347 32042157
    71 6kig:4 (2.9) BS13 CLA ? GO:0009521 ... P15347 32042157
    72 6kig:4 (2.9) BS14 CLA ? GO:0009521 ... P15347 32042157
    73 6kig:4 (2.9) BS15 CLA ? GO:0009521 ... P15347 32042157
    74 6kig:4 (2.9) BS16 CLA ? GO:0009521 ... P15347 32042157
    75 6kig:4 (2.9) BS17 CLA ? GO:0009521 ... P15347 32042157
    76 6kig:4 (2.9) BS18 CLA ? GO:0009521 ... P15347 32042157
    77 6kig:4 (2.9) BS19 CLA ? GO:0009521 ... P15347 32042157
    78 6kig:4 (2.9) BS20 CLA ? GO:0009521 ... P15347 32042157
    79 6kig:5 (2.9) BS01 CLA ? GO:0009521 ... P15347 32042157
    80 6kig:5 (2.9) BS02 CLA ? GO:0009521 ... P15347 32042157
    81 6kig:5 (2.9) BS03 CLA ? GO:0009521 ... P15347 32042157
    82 6kig:5 (2.9) BS04 CLA ? GO:0009521 ... P15347 32042157
    83 6kig:5 (2.9) BS05 CLA ? GO:0009521 ... P15347 32042157
    84 6kig:5 (2.9) BS06 CLA ? GO:0009521 ... P15347 32042157
    85 6kig:5 (2.9) BS07 CLA ? GO:0009521 ... P15347 32042157
    86 6kig:5 (2.9) BS08 CLA ? GO:0009521 ... P15347 32042157
    87 6kig:5 (2.9) BS09 CLA ? GO:0009521 ... P15347 32042157
    88 6kig:5 (2.9) BS10 CLA ? GO:0009521 ... P15347 32042157
    89 6kig:5 (2.9) BS11 CLA ? GO:0009521 ... P15347 32042157
    90 6kig:5 (2.9) BS12 CLA ? GO:0009521 ... P15347 32042157
    91 6kig:5 (2.9) BS13 CLA ? GO:0009521 ... P15347 32042157
    92 6kig:5 (2.9) BS14 CLA ? GO:0009521 ... P15347 32042157
    93 6kig:5 (2.9) BS15 CLA ? GO:0009521 ... P15347 32042157
    94 6kig:5 (2.9) BS16 CLA ? GO:0009521 ... P15347 32042157
    95 6kig:5 (2.9) BS17 CLA ? GO:0009521 ... P15347 32042157
    96 6kig:5 (2.9) BS18 CLA ? GO:0009521 ... P15347 32042157
    97 6kig:5 (2.9) BS19 CLA ? GO:0009521 ... P15347 32042157
    98 6kig:6 (2.9) BS01 CLA ? GO:0009521 ... P15347 32042157
    99 6kig:6 (2.9) BS02 CLA ? GO:0009521 ... P15347 32042157
    100 6kig:6 (2.9) BS03 CLA ? GO:0009521 ... P15347 32042157
    101 6kig:6 (2.9) BS04 CLA ? GO:0009521 ... P15347 32042157
    102 6kig:6 (2.9) BS05 CLA ? GO:0009521 ... P15347 32042157
    103 6kig:6 (2.9) BS06 CLA ? GO:0009521 ... P15347 32042157
    104 6kig:6 (2.9) BS07 CLA ? GO:0009521 ... P15347 32042157
    105 6kig:6 (2.9) BS08 CLA ? GO:0009521 ... P15347 32042157
    106 6kig:6 (2.9) BS09 CLA ? GO:0009521 ... P15347 32042157
    107 6kig:6 (2.9) BS10 CLA ? GO:0009521 ... P15347 32042157
    108 6kig:6 (2.9) BS11 CLA ? GO:0009521 ... P15347 32042157
    109 6kig:6 (2.9) BS12 CLA ? GO:0009521 ... P15347 32042157
    110 6kig:6 (2.9) BS13 CLA ? GO:0009521 ... P15347 32042157
    111 6kig:6 (2.9) BS14 CLA ? GO:0009521 ... P15347 32042157
    112 6kig:6 (2.9) BS15 CLA ? GO:0009521 ... P15347 32042157
    113 6kig:6 (2.9) BS16 CLA ? GO:0009521 ... P15347 32042157
    114 6kig:6 (2.9) BS17 CLA ? GO:0009521 ... P15347 32042157
    115 6kig:6 (2.9) BS18 CLA ? GO:0009521 ... P15347 32042157
    116 6kig:6 (2.9) BS19 CLA ? GO:0009521 ... P15347 32042157
    117 6kig:6 (2.9) BS20 CLA ? GO:0009521 ... P15347 32042157
    118 6kig:A (2.9) BS01 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    119 6kig:A (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    120 6kig:A (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    121 6kig:A (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    122 6kig:A (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    123 6kig:A (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    124 6kig:A (2.9) BS07 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    125 6kig:A (2.9) BS08 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    126 6kig:A (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    127 6kig:A (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    128 6kig:A (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    129 6kig:A (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    130 6kig:A (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    131 6kig:A (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    132 6kig:A (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    133 6kig:A (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    134 6kig:A (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    135 6kig:A (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    136 6kig:A (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    137 6kig:A (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    138 6kig:A (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    139 6kig:A (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    140 6kig:A (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    141 6kig:A (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    142 6kig:A (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    143 6kig:A (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    144 6kig:A (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    145 6kig:A (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    146 6kig:A (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    147 6kig:A (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    148 6kig:A (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    149 6kig:A (2.9) BS32 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    150 6kig:A (2.9) BS33 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    151 6kig:A (2.9) BS34 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    152 6kig:A (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    153 6kig:A (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    154 6kig:A (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    155 6kig:A (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    156 6kig:A (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    157 6kig:A (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    158 6kig:A (2.9) BS41 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    159 6kig:A (2.9) BS42 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    160 6kig:A (2.9) BS43 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    161 6kig:A (2.9) BS44 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    162 6kig:A (2.9) BS45 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    163 6kig:A (2.9) BS46 PQN 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    164 6kig:A (2.9) BS47 SF4 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    165 6kig:A (2.9) BS48 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    166 6kig:A (2.9) BS49 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    167 6kig:A (2.9) BS50 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    168 6kig:A (2.9) BS51 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    169 6kig:A (2.9) BS52 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    170 6kig:B (2.9) BS01 peptide 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    171 6kig:B (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    172 6kig:B (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    173 6kig:B (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    174 6kig:B (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    175 6kig:B (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    176 6kig:B (2.9) BS07 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    177 6kig:B (2.9) BS08 SF4 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    178 6kig:B (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    179 6kig:B (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    180 6kig:B (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    181 6kig:B (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    182 6kig:B (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    183 6kig:B (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    184 6kig:B (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    185 6kig:B (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    186 6kig:B (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    187 6kig:B (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    188 6kig:B (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    189 6kig:B (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    190 6kig:B (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    191 6kig:B (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    192 6kig:B (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    193 6kig:B (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    194 6kig:B (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    195 6kig:B (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    196 6kig:B (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    197 6kig:B (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    198 6kig:B (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    199 6kig:B (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    200 6kig:B (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218