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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 757 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kif:1 (3.3) BS01 CLA ? GO:0009521 ... P15347 32042157
    2 6kif:1 (3.3) BS02 CLA ? GO:0009521 ... P15347 32042157
    3 6kif:1 (3.3) BS03 CLA ? GO:0009521 ... P15347 32042157
    4 6kif:1 (3.3) BS04 CLA ? GO:0009521 ... P15347 32042157
    5 6kif:1 (3.3) BS05 CLA ? GO:0009521 ... P15347 32042157
    6 6kif:1 (3.3) BS06 CLA ? GO:0009521 ... P15347 32042157
    7 6kif:1 (3.3) BS07 CLA ? GO:0009521 ... P15347 32042157
    8 6kif:1 (3.3) BS08 CLA ? GO:0009521 ... P15347 32042157
    9 6kif:1 (3.3) BS09 CLA ? GO:0009521 ... P15347 32042157
    10 6kif:1 (3.3) BS10 CLA ? GO:0009521 ... P15347 32042157
    11 6kif:1 (3.3) BS11 CLA ? GO:0009521 ... P15347 32042157
    12 6kif:1 (3.3) BS12 CLA ? GO:0009521 ... P15347 32042157
    13 6kif:1 (3.3) BS13 CLA ? GO:0009521 ... P15347 32042157
    14 6kif:1 (3.3) BS14 CLA ? GO:0009521 ... P15347 32042157
    15 6kif:1 (3.3) BS15 CLA ? GO:0009521 ... P15347 32042157
    16 6kif:1 (3.3) BS16 CLA ? GO:0009521 ... P15347 32042157
    17 6kif:1 (3.3) BS17 CLA ? GO:0009521 ... P15347 32042157
    18 6kif:1 (3.3) BS18 CLA ? GO:0009521 ... P15347 32042157
    19 6kif:1 (3.3) BS19 CLA ? GO:0009521 ... P15347 32042157
    20 6kif:1 (3.3) BS20 CLA ? GO:0009521 ... P15347 32042157
    21 6kif:2 (3.3) BS01 CLA ? GO:0009521 ... P15347 32042157
    22 6kif:2 (3.3) BS02 CLA ? GO:0009521 ... P15347 32042157
    23 6kif:2 (3.3) BS03 CLA ? GO:0009521 ... P15347 32042157
    24 6kif:2 (3.3) BS04 CLA ? GO:0009521 ... P15347 32042157
    25 6kif:2 (3.3) BS05 CLA ? GO:0009521 ... P15347 32042157
    26 6kif:2 (3.3) BS06 CLA ? GO:0009521 ... P15347 32042157
    27 6kif:2 (3.3) BS07 CLA ? GO:0009521 ... P15347 32042157
    28 6kif:2 (3.3) BS08 CLA ? GO:0009521 ... P15347 32042157
    29 6kif:2 (3.3) BS09 CLA ? GO:0009521 ... P15347 32042157
    30 6kif:2 (3.3) BS10 CLA ? GO:0009521 ... P15347 32042157
    31 6kif:2 (3.3) BS11 CLA ? GO:0009521 ... P15347 32042157
    32 6kif:2 (3.3) BS12 CLA ? GO:0009521 ... P15347 32042157
    33 6kif:2 (3.3) BS13 CLA ? GO:0009521 ... P15347 32042157
    34 6kif:2 (3.3) BS14 CLA ? GO:0009521 ... P15347 32042157
    35 6kif:2 (3.3) BS15 CLA ? GO:0009521 ... P15347 32042157
    36 6kif:2 (3.3) BS16 CLA ? GO:0009521 ... P15347 32042157
    37 6kif:2 (3.3) BS17 CLA ? GO:0009521 ... P15347 32042157
    38 6kif:2 (3.3) BS18 CLA ? GO:0009521 ... P15347 32042157
    39 6kif:2 (3.3) BS19 CLA ? GO:0009521 ... P15347 32042157
    40 6kif:2 (3.3) BS20 CLA ? GO:0009521 ... P15347 32042157
    41 6kif:3 (3.3) BS01 CLA ? GO:0009521 ... P15347 32042157
    42 6kif:3 (3.3) BS02 CLA ? GO:0009521 ... P15347 32042157
    43 6kif:3 (3.3) BS03 CLA ? GO:0009521 ... P15347 32042157
    44 6kif:3 (3.3) BS04 CLA ? GO:0009521 ... P15347 32042157
    45 6kif:3 (3.3) BS05 CLA ? GO:0009521 ... P15347 32042157
    46 6kif:3 (3.3) BS06 CLA ? GO:0009521 ... P15347 32042157
    47 6kif:3 (3.3) BS07 CLA ? GO:0009521 ... P15347 32042157
    48 6kif:3 (3.3) BS08 CLA ? GO:0009521 ... P15347 32042157
    49 6kif:3 (3.3) BS09 CLA ? GO:0009521 ... P15347 32042157
    50 6kif:3 (3.3) BS10 CLA ? GO:0009521 ... P15347 32042157
    51 6kif:3 (3.3) BS11 CLA ? GO:0009521 ... P15347 32042157
    52 6kif:3 (3.3) BS12 CLA ? GO:0009521 ... P15347 32042157
    53 6kif:3 (3.3) BS13 CLA ? GO:0009521 ... P15347 32042157
    54 6kif:3 (3.3) BS14 CLA ? GO:0009521 ... P15347 32042157
    55 6kif:3 (3.3) BS15 CLA ? GO:0009521 ... P15347 32042157
    56 6kif:3 (3.3) BS16 CLA ? GO:0009521 ... P15347 32042157
    57 6kif:3 (3.3) BS17 CLA ? GO:0009521 ... P15347 32042157
    58 6kif:3 (3.3) BS18 CLA ? GO:0009521 ... P15347 32042157
    59 6kif:4 (3.3) BS01 CLA ? GO:0009521 ... P15347 32042157
    60 6kif:4 (3.3) BS02 CLA ? GO:0009521 ... P15347 32042157
    61 6kif:4 (3.3) BS03 CLA ? GO:0009521 ... P15347 32042157
    62 6kif:4 (3.3) BS04 CLA ? GO:0009521 ... P15347 32042157
    63 6kif:4 (3.3) BS05 CLA ? GO:0009521 ... P15347 32042157
    64 6kif:4 (3.3) BS06 CLA ? GO:0009521 ... P15347 32042157
    65 6kif:4 (3.3) BS07 CLA ? GO:0009521 ... P15347 32042157
    66 6kif:4 (3.3) BS08 CLA ? GO:0009521 ... P15347 32042157
    67 6kif:4 (3.3) BS09 CLA ? GO:0009521 ... P15347 32042157
    68 6kif:4 (3.3) BS10 CLA ? GO:0009521 ... P15347 32042157
    69 6kif:4 (3.3) BS11 CLA ? GO:0009521 ... P15347 32042157
    70 6kif:4 (3.3) BS12 CLA ? GO:0009521 ... P15347 32042157
    71 6kif:4 (3.3) BS13 CLA ? GO:0009521 ... P15347 32042157
    72 6kif:4 (3.3) BS14 CLA ? GO:0009521 ... P15347 32042157
    73 6kif:4 (3.3) BS15 CLA ? GO:0009521 ... P15347 32042157
    74 6kif:4 (3.3) BS16 CLA ? GO:0009521 ... P15347 32042157
    75 6kif:4 (3.3) BS17 CLA ? GO:0009521 ... P15347 32042157
    76 6kif:4 (3.3) BS18 CLA ? GO:0009521 ... P15347 32042157
    77 6kif:5 (3.3) BS01 CLA ? GO:0009521 ... P15347 32042157
    78 6kif:5 (3.3) BS02 CLA ? GO:0009521 ... P15347 32042157
    79 6kif:5 (3.3) BS03 CLA ? GO:0009521 ... P15347 32042157
    80 6kif:5 (3.3) BS04 CLA ? GO:0009521 ... P15347 32042157
    81 6kif:5 (3.3) BS05 CLA ? GO:0009521 ... P15347 32042157
    82 6kif:5 (3.3) BS06 CLA ? GO:0009521 ... P15347 32042157
    83 6kif:5 (3.3) BS07 CLA ? GO:0009521 ... P15347 32042157
    84 6kif:5 (3.3) BS08 CLA ? GO:0009521 ... P15347 32042157
    85 6kif:5 (3.3) BS09 CLA ? GO:0009521 ... P15347 32042157
    86 6kif:5 (3.3) BS10 CLA ? GO:0009521 ... P15347 32042157
    87 6kif:5 (3.3) BS11 CLA ? GO:0009521 ... P15347 32042157
    88 6kif:5 (3.3) BS12 CLA ? GO:0009521 ... P15347 32042157
    89 6kif:5 (3.3) BS13 CLA ? GO:0009521 ... P15347 32042157
    90 6kif:5 (3.3) BS14 CLA ? GO:0009521 ... P15347 32042157
    91 6kif:5 (3.3) BS15 CLA ? GO:0009521 ... P15347 32042157
    92 6kif:5 (3.3) BS16 CLA ? GO:0009521 ... P15347 32042157
    93 6kif:5 (3.3) BS17 CLA ? GO:0009521 ... P15347 32042157
    94 6kif:5 (3.3) BS18 CLA ? GO:0009521 ... P15347 32042157
    95 6kif:5 (3.3) BS19 CLA ? GO:0009521 ... P15347 32042157
    96 6kif:6 (3.3) BS01 CLA ? GO:0009521 ... P15347 32042157
    97 6kif:6 (3.3) BS02 CLA ? GO:0009521 ... P15347 32042157
    98 6kif:6 (3.3) BS03 CLA ? GO:0009521 ... P15347 32042157
    99 6kif:6 (3.3) BS04 CLA ? GO:0009521 ... P15347 32042157
    100 6kif:6 (3.3) BS05 CLA ? GO:0009521 ... P15347 32042157
    101 6kif:6 (3.3) BS06 CLA ? GO:0009521 ... P15347 32042157
    102 6kif:6 (3.3) BS07 CLA ? GO:0009521 ... P15347 32042157
    103 6kif:6 (3.3) BS08 CLA ? GO:0009521 ... P15347 32042157
    104 6kif:6 (3.3) BS09 CLA ? GO:0009521 ... P15347 32042157
    105 6kif:6 (3.3) BS10 CLA ? GO:0009521 ... P15347 32042157
    106 6kif:6 (3.3) BS11 CLA ? GO:0009521 ... P15347 32042157
    107 6kif:6 (3.3) BS12 CLA ? GO:0009521 ... P15347 32042157
    108 6kif:6 (3.3) BS13 CLA ? GO:0009521 ... P15347 32042157
    109 6kif:6 (3.3) BS14 CLA ? GO:0009521 ... P15347 32042157
    110 6kif:6 (3.3) BS15 CLA ? GO:0009521 ... P15347 32042157
    111 6kif:6 (3.3) BS16 CLA ? GO:0009521 ... P15347 32042157
    112 6kif:6 (3.3) BS17 CLA ? GO:0009521 ... P15347 32042157
    113 6kif:6 (3.3) BS18 CLA ? GO:0009521 ... P15347 32042157
    114 6kif:6 (3.3) BS19 CLA ? GO:0009521 ... P15347 32042157
    115 6kif:A (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    116 6kif:A (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    117 6kif:A (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    118 6kif:A (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    119 6kif:A (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    120 6kif:A (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    121 6kif:A (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    122 6kif:A (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    123 6kif:A (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    124 6kif:A (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    125 6kif:A (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    126 6kif:A (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    127 6kif:A (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    128 6kif:A (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    129 6kif:A (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    130 6kif:A (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    131 6kif:A (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    132 6kif:A (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    133 6kif:A (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    134 6kif:A (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    135 6kif:A (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    136 6kif:A (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    137 6kif:A (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    138 6kif:A (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    139 6kif:A (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    140 6kif:A (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    141 6kif:A (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    142 6kif:A (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    143 6kif:A (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    144 6kif:A (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    145 6kif:A (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    146 6kif:A (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    147 6kif:A (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    148 6kif:A (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    149 6kif:A (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    150 6kif:A (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    151 6kif:A (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    152 6kif:A (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    153 6kif:A (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    154 6kif:A (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    155 6kif:A (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    156 6kif:A (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    157 6kif:A (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    158 6kif:A (3.3) BS44 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    159 6kif:A (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    160 6kif:A (3.3) BS46 PQN 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    161 6kif:A (3.3) BS47 SF4 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    162 6kif:A (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    163 6kif:A (3.3) BS49 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    164 6kif:A (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    165 6kif:A (3.3) BS51 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    166 6kif:A (3.3) BS52 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    167 6kif:B (3.3) BS01 peptide 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    168 6kif:B (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    169 6kif:B (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    170 6kif:B (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    171 6kif:B (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    172 6kif:B (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    173 6kif:B (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    174 6kif:B (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    175 6kif:B (3.3) BS09 SF4 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    176 6kif:B (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    177 6kif:B (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    178 6kif:B (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    179 6kif:B (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    180 6kif:B (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    181 6kif:B (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    182 6kif:B (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    183 6kif:B (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    184 6kif:B (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    185 6kif:B (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    186 6kif:B (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    187 6kif:B (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    188 6kif:B (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    189 6kif:B (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    190 6kif:B (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    191 6kif:B (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    192 6kif:B (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    193 6kif:B (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    194 6kif:B (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    195 6kif:B (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    196 6kif:B (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    197 6kif:B (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    198 6kif:B (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    199 6kif:B (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    200 6kif:B (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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