Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6j6h:A (3.6) BS01 peptide ? GO:0000244 ... P33334 30879786
    2 6j6h:A (3.6) BS02 rna ? GO:0000244 ... P33334 30879786
    3 6j6h:A (3.6) BS03 rna ? GO:0000244 ... P33334 30879786
    4 6j6h:A (3.6) BS04 rna ? GO:0000244 ... P33334 30879786
    5 6j6h:A (3.6) BS05 rna ? GO:0000244 ... P33334 30879786
    6 6j6h:A (3.6) BS06 IHP ? GO:0000244 ... P33334 30879786
    7 6j6h:C (3.6) BS01 rna ? GO:0000244 ... P36048 30879786
    8 6j6h:C (3.6) BS02 GTP ? GO:0000244 ... P36048 30879786
    9 6j6h:C (3.6) BS03 MG ? GO:0000244 ... P36048 30879786
    10 6j6h:I (3.6) BS01 rna ? GO:0000384 ... P53277 30879786
    11 6j6h:I (3.6) BS02 rna ? GO:0000384 ... P53277 30879786
    12 6j6h:P (3.6) BS01 rna ? GO:0000350 ... P28004 30879786
    13 6j6h:P (3.6) BS02 rna ? GO:0000350 ... P28004 30879786
    14 6j6h:Q (3.6) BS01 rna ? GO:0000398 ... P38241 30879786
    15 6j6h:Q (3.6) BS02 rna ? GO:0000398 ... P38241 30879786
    16 6j6h:Q (3.6) BS03 ZN ? GO:0000398 ... P38241 30879786
    17 6j6h:Q (3.6) BS04 ZN ? GO:0000398 ... P38241 30879786
    18 6j6h:R (3.6) BS01 rna ? GO:0000387 ... Q12046 30879786
    19 6j6h:R (3.6) BS02 rna ? GO:0000387 ... Q12046 30879786
    20 6j6h:R (3.6) BS03 ZN ? GO:0000387 ... Q12046 30879786
    21 6j6h:S (3.6) BS01 rna ? GO:0000398 ... Q03772 30879786
    22 6j6h:S (3.6) BS02 rna ? GO:0000398 ... Q03772 30879786
    23 6j6h:S (3.6) BS03 rna ? GO:0000398 ... Q03772 30879786
    24 6j6h:T (3.6) BS01 peptide ? GO:0000282 ... P25337 30879786
    25 6j6h:T (3.6) BS02 rna ? GO:0000282 ... P25337 30879786
    26 6j6h:T (3.6) BS03 rna ? GO:0000282 ... P25337 30879786
    27 6j6h:T (3.6) BS04 ZN ? GO:0000282 ... P25337 30879786
    28 6j6h:T (3.6) BS05 ZN ? GO:0000282 ... P25337 30879786
    29 6j6h:T (3.6) BS06 ZN ? GO:0000282 ... P25337 30879786
    30 6j6h:Z (3.6) BS01 peptide ? GO:0000398 ... P53333 30879786
    31 6j6h:a (3.6) BS01 rna ? GO:0000398 ... P40567 30879786
    32 6j6h:c (3.6) BS01 rna ? GO:0000350 ... Q03654 30879786
    33 6j6h:c (3.6) BS02 rna ? GO:0000350 ... Q03654 30879786
    34 6j6h:c (3.6) BS03 rna ? GO:0000350 ... Q03654 30879786
    35 6j6h:d (3.6) BS01 rna ? GO:0000245 ... Q12309 30879786
    36 6j6h:e (3.6) BS01 rna ? GO:0000243 ... Q06217 30879786
    37 6j6h:g (3.6) BS01 rna ? GO:0000243 ... Q06217 30879786
    38 6j6h:h (3.6) BS01 rna ? GO:0000243 ... P54999 30879786
    39 6j6h:i (3.6) BS01 rna ? GO:0000243 ... Q12330 30879786
    40 6j6h:j (3.6) BS01 rna ? GO:0000243 ... P40204 30879786
    41 6j6h:k (3.6) BS01 rna ? GO:0000243 ... P40018 30879786
    42 6j6h:l (3.6) BS01 rna ? GO:0000243 ... P43321 30879786
    43 6j6h:m (3.6) BS01 rna ? GO:0000243 ... Q02260 30879786
    44 6j6h:s (3.6) BS01 rna ? GO:0000243 ... P40018 30879786
    45 6j6h:u (3.6) BS01 rna ? GO:0000243 ... Q12330 30879786
    46 6j6h:v (3.6) BS01 rna ? GO:0000349 ... Q04048 30879786
    47 6j6h:w (3.6) BS01 rna ? GO:0000243 ... P54999 30879786
    48 6j6h:x (3.6) BS01 rna ? GO:0000243 ... P40204 30879786
    49 6j6h:y (3.6) BS01 rna ? GO:0000243 ... P43321 30879786
    50 6j6h:z (3.6) BS01 rna ? GO:0000243 ... Q02260 30879786
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218