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BioLiP
Download all results in tab-seperated text for 97 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ip6:1D (4.5) BS01 rna ? GO:0002181 ... P62917 31080011
    2 6ip6:1D (4.5) BS02 rna ? GO:0002181 ... P62917 31080011
    3 6ip6:1E (4.5) BS01 rna ? GO:0002181 ... P39023 31080011
    4 6ip6:1F (4.5) BS01 rna ? GO:0002181 ... P36578 31080011
    5 6ip6:1F (4.5) BS02 rna ? GO:0002181 ... P36578 31080011
    6 6ip6:1G (4.5) BS01 rna ? GO:0000027 ... P46777 31080011
    7 6ip6:1G (4.5) BS02 rna ? GO:0000027 ... P46777 31080011
    8 6ip6:1H (4.5) BS01 rna ? GO:0000027 ... Q02878 31080011
    9 6ip6:20 (4.5) BS01 rna ? GO:0000028 ... P39019 31080011
    10 6ip6:21 (4.5) BS01 rna ? GO:0002181 ... P60866 31080011
    11 6ip6:2A (4.5) BS01 rna ? GO:0000463 ... P18124 31080011
    12 6ip6:2A (4.5) BS02 rna ? GO:0000463 ... P18124 31080011
    13 6ip6:2B (4.5) BS01 rna ? GO:0000470 ... P62424 31080011
    14 6ip6:2B (4.5) BS02 rna ? GO:0000470 ... P62424 31080011
    15 6ip6:2C (4.5) BS01 rna ? GO:0002181 ... P32969 31080011
    16 6ip6:2D (4.5) BS01 rna ? GO:0000027 ... Q96L21 31080011
    17 6ip6:2D (4.5) BS02 rna ? GO:0000027 ... Q96L21 31080011
    18 6ip6:2D (4.5) BS03 rna ? GO:0000027 ... Q96L21 31080011
    19 6ip6:2E (4.5) BS01 rna ? GO:0000027 ... P62913 31080011
    20 6ip6:2E (4.5) BS02 rna ? GO:0000027 ... P62913 31080011
    21 6ip6:2E (4.5) BS03 rna ? GO:0000027 ... P62913 31080011
    22 6ip6:2F (4.5) BS01 rna ? GO:0001824 ... P26373 31080011
    23 6ip6:2F (4.5) BS02 rna ? GO:0001824 ... P26373 31080011
    24 6ip6:2G (4.5) BS01 rna ? GO:0002181 ... P50914 31080011
    25 6ip6:2H (4.5) BS01 rna ? GO:0002181 ... P61313 31080011
    26 6ip6:2H (4.5) BS02 rna ? GO:0002181 ... P61313 31080011
    27 6ip6:2I (4.5) BS01 rna ? GO:0002181 ... P40429 31080011
    28 6ip6:2J (4.5) BS01 rna ? GO:0002181 ... P18621 31080011
    29 6ip6:2J (4.5) BS02 rna ? GO:0002181 ... P18621 31080011
    30 6ip6:2K (4.5) BS01 rna ? GO:0002181 ... Q07020 31080011
    31 6ip6:2L (4.5) BS01 rna ? GO:0002181 ... P84098 31080011
    32 6ip6:2L (4.5) BS02 rna ? GO:0002181 ... P84098 31080011
    33 6ip6:2M (4.5) BS01 rna ? GO:0002181 ... Q02543 31080011
    34 6ip6:2M (4.5) BS02 rna ? GO:0002181 ... Q02543 31080011
    35 6ip6:2N (4.5) BS01 rna ? GO:0002181 ... P46778 31080011
    36 6ip6:2N (4.5) BS02 rna ? GO:0002181 ... P46778 31080011
    37 6ip6:2O (4.5) BS01 rna ? GO:0002181 ... P35268 31080011
    38 6ip6:2P (4.5) BS01 rna ? GO:0000122 ... P62829 31080011
    39 6ip6:2Q (4.5) BS01 rna ? GO:0000027 ... P83731 31080011
    40 6ip6:2Q (4.5) BS02 rna ? GO:0000027 ... P83731 31080011
    41 6ip6:2R (4.5) BS01 rna ? GO:0000027 ... P62750 31080011
    42 6ip6:2R (4.5) BS02 rna ? GO:0000027 ... P62750 31080011
    43 6ip6:2S (4.5) BS01 rna ? GO:0002181 ... P61254 31080011
    44 6ip6:2S (4.5) BS02 rna ? GO:0002181 ... P61254 31080011
    45 6ip6:2T (4.5) BS01 rna ? GO:0002181 ... P61353 31080011
    46 6ip6:2U (4.5) BS01 rna ? GO:0002181 ... P46776 31080011
    47 6ip6:2V (4.5) BS01 rna ? GO:0002181 ... P47914 31080011
    48 6ip6:2W (4.5) BS01 rna ? GO:0002181 ... P62888 31080011
    49 6ip6:2X (4.5) BS01 rna ? GO:0002181 ... P62899 31080011
    50 6ip6:2Y (4.5) BS01 rna ? GO:0002181 ... P62910 31080011
    51 6ip6:2Z (4.5) BS01 rna ? GO:0000049 ... P18077 31080011
    52 6ip6:2a (4.5) BS01 rna ? GO:0002181 ... P49207 31080011
    53 6ip6:2b (4.5) BS01 rna ? GO:0000463 ... P42766 31080011
    54 6ip6:2b (4.5) BS02 rna ? GO:0000463 ... P42766 31080011
    55 6ip6:2c (4.5) BS01 rna ? GO:0002181 ... Q9Y3U8 31080011
    56 6ip6:2d (4.5) BS01 rna ? GO:0002181 ... P61927 31080011
    57 6ip6:2d (4.5) BS02 rna ? GO:0002181 ... P61927 31080011
    58 6ip6:2e (4.5) BS01 rna ? GO:0001501 ... P63173 31080011
    59 6ip6:2f (4.5) BS01 rna ? GO:0002181 ... P62891 31080011
    60 6ip6:2f (4.5) BS02 rna ? GO:0002181 ... P62891 31080011
    61 6ip6:2g (4.5) BS01 rna ? GO:0002181 ... P62987 31080011
    62 6ip6:2i (4.5) BS01 rna ? GO:0002181 ... P83881 31080011
    63 6ip6:2j (4.5) BS01 rna ? GO:0002181 ... P61513 31080011
    64 6ip6:2k (4.5) BS01 rna ? GO:0002181 ... P46779 31080011
    65 6ip6:2n (4.5) BS01 rna ? GO:0000028 ... P08865 31080011
    66 6ip6:2o (4.5) BS01 rna ? GO:0002181 ... P61247 31080011
    67 6ip6:2o (4.5) BS02 rna ? GO:0002181 ... P61247 31080011
    68 6ip6:2p (4.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 31080011
    69 6ip6:2q (4.5) BS01 rna ? GO:0002181 ... P62701 31080011
    70 6ip6:2r (4.5) BS01 rna ? GO:0000028 ... P46782 31080011
    71 6ip6:2s (4.5) BS01 rna ? GO:0001843 ... P62081 31080011
    72 6ip6:2t (4.5) BS01 rna ? GO:0000462 ... P62241 31080011
    73 6ip6:2t (4.5) BS02 rna ? GO:0000462 ... P62241 31080011
    74 6ip6:2u (4.5) BS01 rna ? GO:0002181 ... P46783 31080011
    75 6ip6:2v (4.5) BS01 rna ? GO:0002181 ... P62280 31080011
    76 6ip6:2w (4.5) BS01 rna ? GO:0000028 ... P62841 31080011
    77 6ip6:2x (4.5) BS01 rna ? GO:0000462 ... P62249 31080011
    78 6ip6:2y (4.5) BS01 rna ? GO:0002181 ... P08708 31080011
    79 6ip6:2z (4.5) BS01 rna ? GO:0002181 ... P62269 31080011
    80 6ip6:3B (4.5) BS01 rna ? GO:0002181 ... P62266 31080011
    81 6ip6:3C (4.5) BS01 rna ? GO:0002181 ... P62854 31080011
    82 6ip6:3D (4.5) BS01 rna ? GO:0000028 ... P62857 31080011
    83 6ip6:3E (4.5) BS01 rna ? GO:0002181 ... P62273 31080011
    84 6ip6:3F (4.5) BS01 rna ? GO:0001891 ... P63244 31080011
    85 6ip6:3G (4.5) BS01 rna ? GO:0002181 ... P15880 31080011
    86 6ip6:3H (4.5) BS01 rna ? GO:0000082 ... P62753 31080011
    87 6ip6:3I (4.5) BS01 rna ? GO:0002181 ... P46781 31080011
    88 6ip6:3J (4.5) BS01 rna ? GO:0002181 ... P25398 31080011
    89 6ip6:3K (4.5) BS01 rna ? GO:0002181 ... P62277 31080011
    90 6ip6:3L (4.5) BS01 rna ? GO:0000028 ... P62263 31080011
    91 6ip6:3M (4.5) BS01 rna ? GO:0002181 ... P62244 31080011
    92 6ip6:3N (4.5) BS01 rna ? GO:0002181 ... P62847 31080011
    93 6ip6:3O (4.5) BS01 rna ? GO:0002181 ... P62851 31080011
    94 6ip6:3P (4.5) BS01 rna ? GO:0000028 ... P42677 31080011
    95 6ip6:3P (4.5) BS02 rna ? GO:0000028 ... P42677 31080011
    96 6ip6:3Q (4.5) BS01 rna ? GO:0003735 ... P62861 31080011
    97 6ip6:3R (4.5) BS01 rna ? GO:0002181 ... P62979 31080011
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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