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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6hrm:B (2.96) BS01 rna ? GO:0000027 ... P60422 30518861
    2 6hrm:C (2.96) BS01 rna ? GO:0000027 ... P60438 30518861
    3 6hrm:D (2.96) BS01 rna ? GO:0001070 ... P60723 30518861
    4 6hrm:E (2.96) BS01 rna ? GO:0000027 ... P62399 30518861
    5 6hrm:E (2.96) BS02 rna ? GO:0000027 ... P62399 30518861
    6 6hrm:F (2.96) BS01 rna ? GO:0000027 ... P0AG55 30518861
    7 6hrm:G (2.96) BS01 rna ? GO:0002181 ... P0A7R1 30518861
    8 6hrm:H (2.96) BS01 rna ? GO:0003735 ... P0A7J3 30518861
    9 6hrm:I (2.96) BS01 rna ? GO:0000027 ... P0A7J7 30518861
    10 6hrm:J (2.96) BS01 rna ? GO:0002181 ... P0AA10 30518861
    11 6hrm:K (2.96) BS01 rna ? GO:0002181 ... P0ADY3 30518861
    12 6hrm:L (2.96) BS01 rna ? GO:0002181 ... P02413 30518861
    13 6hrm:M (2.96) BS01 rna ? GO:0000027 ... P0ADY7 30518861
    14 6hrm:M (2.96) BS02 rna ? GO:0000027 ... P0ADY7 30518861
    15 6hrm:N (2.96) BS01 rna ? GO:0000027 ... P0AG44 30518861
    16 6hrm:O (2.96) BS01 rna ? GO:0002181 ... P0C018 30518861
    17 6hrm:O (2.96) BS02 rna ? GO:0002181 ... P0C018 30518861
    18 6hrm:P (2.96) BS01 rna ? GO:0000027 ... P0A7K6 30518861
    19 6hrm:Q (2.96) BS01 rna ? GO:0000027 ... P0A7L3 30518861
    20 6hrm:R (2.96) BS01 rna ? GO:0002181 ... P0AG48 30518861
    21 6hrm:S (2.96) BS01 rna ? GO:0002181 ... P61175 30518861
    22 6hrm:T (2.96) BS01 rna ? GO:0000027 ... P0ADZ0 30518861
    23 6hrm:U (2.96) BS01 rna ? GO:0000027 ... P60624 30518861
    24 6hrm:V (2.96) BS01 rna ? GO:0000027 ... P68919 30518861
    25 6hrm:W (2.96) BS01 rna ? GO:0003735 ... P0A7L8 30518861
    26 6hrm:W (2.96) BS02 rna ? GO:0003735 ... P0A7L8 30518861
    27 6hrm:X (2.96) BS01 rna ? GO:0000027 ... P0A7M2 30518861
    28 6hrm:Y (2.96) BS01 rna ? GO:0000027 ... P0A7M6 30518861
    29 6hrm:Z (2.96) BS01 rna ? GO:0000027 ... P0AG51 30518861
    30 6hrm:a (2.96) BS01 rna ? GO:0002181 ... P0A7M9 30518861
    31 6hrm:a (2.96) BS02 rna ? GO:0002181 ... P0A7M9 30518861
    32 6hrm:a (2.96) BS03 ZN ? GO:0002181 ... P0A7M9 30518861
    33 6hrm:b (2.96) BS01 rna ? GO:0000027 ... P0A7N4 30518861
    34 6hrm:c (2.96) BS01 rna ? GO:0000027 ... P0A7N9 30518861
    35 6hrm:d (2.96) BS01 rna ? GO:0002181 ... P0A7P5 30518861
    36 6hrm:e (2.96) BS01 rna ? GO:0002181 ... P0A7Q1 30518861
    37 6hrm:f (2.96) BS01 rna ? GO:0002181 ... P0A7Q6 30518861
    38 6hrm:g (2.96) BS01 rna ? GO:0000028 ... P0A7V0 30518861
    39 6hrm:h (2.96) BS01 rna ? GO:0003676 ... P0A7V3 30518861
    40 6hrm:i (2.96) BS01 rna ? GO:0000028 ... P0A7V8 30518861
    41 6hrm:j (2.96) BS01 rna ? GO:0000028 ... P0A7W1 30518861
    42 6hrm:k (2.96) BS01 rna ? GO:0003735 ... P02358 30518861
    43 6hrm:l (2.96) BS01 rna ? GO:0003723 ... P02359 30518861
    44 6hrm:m (2.96) BS01 rna ? GO:0000028 ... P0A7W7 30518861
    45 6hrm:n (2.96) BS01 rna ? GO:0000049 ... P0A7X3 30518861
    46 6hrm:o (2.96) BS01 rna ? GO:0000049 ... P0A7R5 30518861
    47 6hrm:p (2.96) BS01 rna ? GO:0002181 ... P0A7R9 30518861
    48 6hrm:q (2.96) BS01 rna ? GO:0000049 ... P0A7S3 30518861
    49 6hrm:r (2.96) BS01 rna ? GO:0000049 ... P0A7S9 30518861
    50 6hrm:r (2.96) BS02 MG ? GO:0000049 ... P0A7S9 30518861
    51 6hrm:s (2.96) BS01 rna ? GO:0000028 ... P0AG59 30518861
    52 6hrm:t (2.96) BS01 rna ? GO:0000028 ... P0ADZ4 30518861
    53 6hrm:u (2.96) BS01 rna ? GO:0000028 ... P0A7T3 30518861
    54 6hrm:v (2.96) BS01 rna ? GO:0000028 ... P0AG63 30518861
    55 6hrm:w (2.96) BS01 rna ? GO:0003735 ... P0A7T7 30518861
    56 6hrm:x (2.96) BS01 rna ? GO:0000028 ... P0A7U3 30518861
    57 6hrm:y (2.96) BS01 rna ? GO:0000028 ... P0A7U7 30518861
    58 6hrm:z (2.96) BS01 rna ? GO:0000028 ... P68679 30518861
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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