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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6hiy:CE (3.27) BS01 rna ? GO:0003735 ... Q38AX6 30213880
    2 6hiy:CF (3.27) BS01 rna ? GO:0005739 ... Q38BW5 30213880
    3 6hiy:CH (3.27) BS01 rna ? GO:0000314 ... Q388R7 30213880
    4 6hiy:CK (3.27) BS01 rna ? GO:0003735 ... Q389T7 30213880
    5 6hiy:CL (3.27) BS01 rna N/A N/A N/A 30213880
    6 6hiy:CO (3.27) BS01 rna ? GO:0005739 ... Q4GZ99 30213880
    7 6hiy:CP (3.27) BS01 rna ? GO:0005737 ... Q384N9 30213880
    8 6hiy:CQ (3.27) BS01 rna ? GO:0000314 ... Q38DP8 30213880
    9 6hiy:CR (3.27) BS01 rna ? GO:0003723 ... Q38AS2 30213880
    10 6hiy:CU (3.27) BS01 rna ? GO:0005739 ... Q580M9 30213880
    11 6hiy:CZ (3.27) BS01 rna ? GO:0005739 ... Q57WU2 30213880
    12 6hiy:Ca (3.27) BS01 rna ? GO:0005739 ... Q38DR3 30213880
    13 6hiy:Cb (3.27) BS01 rna ? GO:0005737 ... Q57VB2 30213880
    14 6hiy:Cd (3.27) BS01 rna ? GO:0005739 ... Q38DK6 30213880
    15 6hiy:Cj (3.27) BS01 rna ? GO:0005739 ... Q57UK0 30213880
    16 6hiy:Cm (3.27) BS01 rna ? GO:0005737 ... Q38C96 30213880
    17 6hiy:Cn (3.27) BS01 rna ? GO:0005739 ... Q57VQ9 30213880
    18 6hiy:Cp (3.27) BS01 rna ? GO:0005739 ... Q389L3 30213880
    19 6hiy:Cr (3.27) BS01 ZN ? GO:0004784 ... Q585I1 30213880
    20 6hiy:Cv (3.27) BS01 rna 3.1.2.4 GO:0003860 ... Q383R4 30213880
    21 6hiy:Cv (3.27) BS02 peptide 3.1.2.4 GO:0003860 ... Q383R4 30213880
    22 6hiy:DA (3.27) BS01 rna ? GO:0005739 ... Q57UJ2 30213880
    23 6hiy:DA (3.27) BS02 ZN ? GO:0005739 ... Q57UJ2 30213880
    24 6hiy:DD (3.27) BS01 rna ? GO:0000963 ... Q385L8 30213880
    25 6hiy:DP (3.27) BS01 rna ? GO:0005737 ... Q38F25 30213880
    26 6hiy:DQ (3.27) BS01 rna ? GO:0005737 ... Q382E8 30213880
    27 6hiy:DR (3.27) BS01 rna ? GO:0005739 ... Q57UA2 30213880
    28 6hiy:DS (3.27) BS01 rna ? GO:0005739 ... Q388L7 30213880
    29 6hiy:DS (3.27) BS02 ZN ? GO:0005739 ... Q388L7 30213880
    30 6hiy:DS (3.27) BS03 ZN ? GO:0005739 ... Q388L7 30213880
    31 6hiy:DU (3.27) BS01 rna ? GO:0005739 ... Q582T9 30213880
    32 6hiy:DZ (3.27) BS01 rna ? GO:0005739 ... Q587C4 30213880
    33 6hiy:Da (3.27) BS01 rna N/A N/A N/A 30213880
    34 6hiy:US (3.27) BS01 rna N/A N/A N/A 30213880
    35 6hiy:UT (3.27) BS01 rna N/A N/A N/A 30213880
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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