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BioLiP
Download all results in tab-seperated text for 87 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6hix:A1 (3.39) BS01 rna ? GO:0003735 ... Q586A2 30213880
    2 6hix:A1 (3.39) BS02 peptide ? GO:0003735 ... Q586A2 30213880
    3 6hix:A2 (3.39) BS01 rna ? GO:0003735 ... Q38EM7 30213880
    4 6hix:A2 (3.39) BS02 peptide ? GO:0003735 ... Q38EM7 30213880
    5 6hix:A3 (3.39) BS01 rna ? N/A C9ZY77 30213880
    6 6hix:A3 (3.39) BS02 peptide ? N/A C9ZY77 30213880
    7 6hix:A4 (3.39) BS01 rna ? GO:0005739 ... Q38AB0 30213880
    8 6hix:A5 (3.39) BS01 rna ? GO:0005634 ... Q584F4 30213880
    9 6hix:A5 (3.39) BS02 ZN ? GO:0005634 ... Q584F4 30213880
    10 6hix:A6 (3.39) BS01 rna ? GO:0005739 ... Q581Q0 30213880
    11 6hix:A8 (3.39) BS01 rna ? N/A D0A1K1 30213880
    12 6hix:A8 (3.39) BS02 peptide ? N/A D0A1K1 30213880
    13 6hix:A9 (3.39) BS01 rna ? N/A C9ZMA9 30213880
    14 6hix:A9 (3.39) BS02 peptide ? N/A C9ZMA9 30213880
    15 6hix:A9 (3.39) BS03 ZN ? N/A C9ZMA9 30213880
    16 6hix:AB (3.39) BS01 peptide N/A GO:0050825 ... N/A 30213880
    17 6hix:AE (3.39) BS01 rna ? GO:0003735 ... Q580R4 30213880
    18 6hix:AE (3.39) BS02 peptide ? GO:0003735 ... Q580R4 30213880
    19 6hix:AF (3.39) BS01 rna ? GO:0003735 ... A0A1G4HYD1 30213880
    20 6hix:AF (3.39) BS02 peptide ? GO:0003735 ... A0A1G4HYD1 30213880
    21 6hix:AF (3.39) BS03 NAD ? GO:0003735 ... A0A1G4HYD1 30213880
    22 6hix:AI (3.39) BS01 rna ? GO:0003735 ... Q57UC5 30213880
    23 6hix:AI (3.39) BS02 peptide ? GO:0003735 ... Q57UC5 30213880
    24 6hix:AI (3.39) BS03 peptide ? GO:0003735 ... Q57UC5 30213880
    25 6hix:AJ (3.39) BS01 rna ? N/A C9ZPD1 30213880
    26 6hix:AK (3.39) BS01 rna ? GO:0003735 ... Q586R9 30213880
    27 6hix:AN (3.39) BS01 rna ? GO:0003729 ... Q580D5 30213880
    28 6hix:AP (3.39) BS01 rna ? GO:0003735 ... Q57U68 30213880
    29 6hix:AP (3.39) BS02 NAD ? GO:0003735 ... Q57U68 30213880
    30 6hix:AQ (3.39) BS01 rna ? GO:0003735 ... Q57UM6 30213880
    31 6hix:AQ (3.39) BS02 peptide ? GO:0003735 ... Q57UM6 30213880
    32 6hix:AR (3.39) BS01 rna ? GO:0000315 ... Q57YI7 30213880
    33 6hix:AT (3.39) BS01 rna ? GO:0005737 ... Q4GZ98 30213880
    34 6hix:AU (3.39) BS01 rna ? GO:0003735 ... Q383R2 30213880
    35 6hix:AV (3.39) BS01 rna ? GO:0003723 ... C9ZT11 30213880
    36 6hix:AW (3.39) BS01 rna ? GO:0003735 ... C9ZSI8 30213880
    37 6hix:AX (3.39) BS01 rna ? GO:0003735 ... Q387G3 30213880
    38 6hix:AY (3.39) BS01 rna ? GO:0003723 ... C9ZK52 30213880
    39 6hix:Ab (3.39) BS01 rna ? GO:0005739 ... Q381T7 30213880
    40 6hix:Ae (3.39) BS01 rna ? N/A D0A8I6 30213880
    41 6hix:Af (3.39) BS01 rna ? GO:0005739 ... Q383S1 30213880
    42 6hix:Ag (3.39) BS01 rna ? GO:0003735 ... Q583E5 30213880
    43 6hix:Al (3.39) BS01 rna ? GO:0005739 ... Q57Z82 30213880
    44 6hix:Ao (3.39) BS01 rna ? N/A Q385V2 30213880
    45 6hix:Ap (3.39) BS01 rna ? GO:0005739 ... Q57YA9 30213880
    46 6hix:Ap (3.39) BS02 peptide ? GO:0005739 ... Q57YA9 30213880
    47 6hix:Ap (3.39) BS03 peptide ? GO:0005739 ... Q57YA9 30213880
    48 6hix:Ap (3.39) BS04 peptide ? GO:0005739 ... Q57YA9 30213880
    49 6hix:At (3.39) BS01 rna ? N/A C9ZU82 30213880
    50 6hix:At (3.39) BS02 peptide ? N/A C9ZU82 30213880
    51 6hix:Av (3.39) BS01 rna ? GO:0005739 ... Q383B7 30213880
    52 6hix:Av (3.39) BS02 NAD ? GO:0005739 ... Q383B7 30213880
    53 6hix:BA (3.39) BS01 rna ? N/A D0A5V6 30213880
    54 6hix:BE (3.39) BS01 rna ? GO:0005739 ... Q57WG1 30213880
    55 6hix:BF (3.39) BS01 rna ? N/A C9ZR63 30213880
    56 6hix:BH (3.39) BS01 peptide ? GO:0005739 ... Q38AM5 30213880
    57 6hix:BI (3.39) BS01 rna ? GO:0000963 ... Q38CK0 30213880
    58 6hix:BI (3.39) BS02 peptide ? GO:0000963 ... Q38CK0 30213880
    59 6hix:BK (3.39) BS01 rna ? N/A C9ZQR6 30213880
    60 6hix:BL (3.39) BS01 rna ? N/A D0A4P5 30213880
    61 6hix:BM (3.39) BS01 rna ? GO:0005739 ... Q381N5 30213880
    62 6hix:BM (3.39) BS02 peptide ? GO:0005739 ... Q381N5 30213880
    63 6hix:BO (3.39) BS01 rna ? N/A D0A755 30213880
    64 6hix:BP (3.39) BS01 rna ? N/A D0A0S6 30213880
    65 6hix:BP (3.39) BS02 peptide ? N/A D0A0S6 30213880
    66 6hix:BQ (3.39) BS01 rna 5.2.1.8 GO:0000413 ... Q57WF8 30213880
    67 6hix:BR (3.39) BS01 peptide ? GO:0005739 ... Q586A6 30213880
    68 6hix:BR (3.39) BS02 peptide ? GO:0005739 ... Q586A6 30213880
    69 6hix:BR (3.39) BS03 peptide ? GO:0005739 ... Q586A6 30213880
    70 6hix:BT (3.39) BS01 rna ? N/A C9ZPU8 30213880
    71 6hix:BU (3.39) BS01 rna ? N/A D0A7Z9 30213880
    72 6hix:BV (3.39) BS01 rna ? N/A C9ZUW3 30213880
    73 6hix:BW (3.39) BS01 rna ? GO:0005739 ... Q57WW5 30213880
    74 6hix:BX (3.39) BS01 rna ? GO:0046872 ... Q585P1 30213880
    75 6hix:BX (3.39) BS02 ZN ? GO:0046872 ... Q585P1 30213880
    76 6hix:BX (3.39) BS03 ZN ? GO:0046872 ... Q585P1 30213880
    77 6hix:BY (3.39) BS01 rna ? N/A Q580U5 30213880
    78 6hix:BY (3.39) BS02 peptide ? N/A Q580U5 30213880
    79 6hix:Ba (3.39) BS01 rna ? N/A D0A4T0 30213880
    80 6hix:Bc (3.39) BS01 rna ? GO:0005739 ... Q389K3 30213880
    81 6hix:Be (3.39) BS01 peptide ? GO:0005737 ... Q388L8 30213880
    82 6hix:Be (3.39) BS02 ZN ? GO:0005737 ... Q388L8 30213880
    83 6hix:Bf (3.39) BS01 peptide ? GO:0005739 ... Q388M2 30213880
    84 6hix:Bg (3.39) BS01 rna ? GO:0010608 ... Q587H8 30213880
    85 6hix:Bh (3.39) BS01 rna ? N/A A0A1G4HYZ0 30213880
    86 6hix:Bh (3.39) BS02 ZN ? N/A A0A1G4HYZ0 30213880
    87 6hix:UD (3.39) BS01 rna N/A N/A N/A 30213880
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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