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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6hcq:A3 (6.5) BS01 rna ? GO:0002181 ... G1TT27 30293783
    2 6hcq:A3 (6.5) BS02 rna ? GO:0002181 ... G1TT27 30293783
    3 6hcq:B2 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    4 6hcq:B3 (6.5) BS01 rna ? GO:0003723 ... G1TL06 30293783
    5 6hcq:C2 (6.5) BS01 rna ? GO:0003735 ... G1SS70 30293783
    6 6hcq:C2 (6.5) BS02 rna ? GO:0003735 ... G1SS70 30293783
    7 6hcq:C3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    8 6hcq:C3 (6.5) BS02 rna N/A GO:0003735 ... N/A 30293783
    9 6hcq:D2 (6.5) BS01 rna N/A GO:0003723 ... N/A 30293783
    10 6hcq:D3 (6.5) BS01 rna ? GO:0000027 ... P19949 30293783
    11 6hcq:D3 (6.5) BS02 rna ? GO:0000027 ... P19949 30293783
    12 6hcq:E2 (6.5) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 30293783
    13 6hcq:E2 (6.5) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 30293783
    14 6hcq:E3 (6.5) BS01 rna ? GO:0000027 ... G1SKF7 30293783
    15 6hcq:F2 (6.5) BS01 rna N/A GO:0003723 ... N/A 30293783
    16 6hcq:F3 (6.5) BS01 rna ? GO:0000463 ... G1TUB1 30293783
    17 6hcq:F3 (6.5) BS02 rna ? GO:0000463 ... G1TUB1 30293783
    18 6hcq:G2 (6.5) BS01 rna ? GO:0000028 ... G1TFM5 30293783
    19 6hcq:G2 (6.5) BS02 MG ? GO:0000028 ... G1TFM5 30293783
    20 6hcq:G3 (6.5) BS01 rna N/A GO:0042254 ... N/A 30293783
    21 6hcq:G3 (6.5) BS02 rna N/A GO:0042254 ... N/A 30293783
    22 6hcq:H2 (6.5) BS01 rna ? GO:0000082 ... G1TM55 30293783
    23 6hcq:H3 (6.5) BS01 rna ? GO:0002181 ... G1SWI6 30293783
    24 6hcq:I2 (6.5) BS01 rna ? GO:0003735 ... G1SVB0 30293783
    25 6hcq:I3 (6.5) BS01 rna ? GO:0000027 ... B7NZQ2 30293783
    26 6hcq:I3 (6.5) BS02 rna ? GO:0000027 ... B7NZQ2 30293783
    27 6hcq:I3 (6.5) BS03 rna ? GO:0000027 ... B7NZQ2 30293783
    28 6hcq:J2 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    29 6hcq:J3 (6.5) BS01 rna ? GO:0003723 ... G1TUB8 30293783
    30 6hcq:J3 (6.5) BS02 rna ? GO:0003723 ... G1TUB8 30293783
    31 6hcq:K2 (6.5) BS01 rna ? GO:0003723 ... B7NZS8 30293783
    32 6hcq:L2 (6.5) BS01 rna ? GO:0003723 ... G1TPV3 30293783
    33 6hcq:L3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    34 6hcq:M2 (6.5) BS01 rna ? GO:0003735 ... G1TRM4 30293783
    35 6hcq:M3 (6.5) BS01 rna ? GO:0003723 ... G1SZ12 30293783
    36 6hcq:N2 (6.5) BS01 rna ? GO:0003735 ... G1SFR8 30293783
    37 6hcq:N3 (6.5) BS01 rna ? GO:0002181 ... G1T0C1 30293783
    38 6hcq:N3 (6.5) BS02 rna ? GO:0002181 ... G1T0C1 30293783
    39 6hcq:O2 (6.5) BS01 rna ? GO:0003735 ... G1SP51 30293783
    40 6hcq:O3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    41 6hcq:P2 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    42 6hcq:P3 (6.5) BS01 rna ? GO:0002181 ... G1SCJ6 30293783
    43 6hcq:P3 (6.5) BS02 rna ? GO:0002181 ... G1SCJ6 30293783
    44 6hcq:Q2 (6.5) BS01 rna ? GO:0000028 ... G1U0Q2 30293783
    45 6hcq:Q3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    46 6hcq:R2 (6.5) BS01 rna ? GO:0000462 ... G1SGX4 30293783
    47 6hcq:R3 (6.5) BS01 rna N/A GO:0003723 ... N/A 30293783
    48 6hcq:R3 (6.5) BS02 rna N/A GO:0003723 ... N/A 30293783
    49 6hcq:S2 (6.5) BS01 rna ? GO:0003735 ... G1TU13 30293783
    50 6hcq:S3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    51 6hcq:S3 (6.5) BS02 rna N/A GO:0003735 ... N/A 30293783
    52 6hcq:T2 (6.5) BS01 rna ? GO:0003676 ... G1TPG3 30293783
    53 6hcq:T3 (6.5) BS01 rna ? GO:0003735 ... G1SHQ2 30293783
    54 6hcq:T3 (6.5) BS02 rna ? GO:0003735 ... G1SHQ2 30293783
    55 6hcq:U2 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    56 6hcq:U3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    57 6hcq:V2 (6.5) BS01 rna ? GO:0003723 ... G1SIZ2 30293783
    58 6hcq:V3 (6.5) BS01 rna ? GO:0000122 ... G1T6D1 30293783
    59 6hcq:V3 (6.5) BS02 rna ? GO:0000122 ... G1T6D1 30293783
    60 6hcq:X2 (6.5) BS01 rna ? GO:0003735 ... G1TG89 30293783
    61 6hcq:X3 (6.5) BS01 rna ? GO:0000027 ... G1SE76 30293783
    62 6hcq:X3 (6.5) BS02 rna ? GO:0000027 ... G1SE76 30293783
    63 6hcq:Y2 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    64 6hcq:Y3 (6.5) BS01 rna ? GO:0002181 ... G1SQH0 30293783
    65 6hcq:Y3 (6.5) BS02 rna ? GO:0002181 ... G1SQH0 30293783
    66 6hcq:Z2 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    67 6hcq:Z3 (6.5) BS01 rna ? GO:0003735 ... G1TXF6 30293783
    68 6hcq:a3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    69 6hcq:b2 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    70 6hcq:b2 (6.5) BS02 rna N/A GO:0003735 ... N/A 30293783
    71 6hcq:b2 (6.5) BS03 ZN N/A GO:0003735 ... N/A 30293783
    72 6hcq:b3 (6.5) BS01 rna ? GO:0002181 ... G1SGR6 30293783
    73 6hcq:c2 (6.5) BS01 rna ? GO:0000028 ... G1TZ76 30293783
    74 6hcq:c3 (6.5) BS01 rna ? GO:0002181 ... G1TDL2 30293783
    75 6hcq:d2 (6.5) BS01 rna ? GO:0000028 ... G1TIB4 30293783
    76 6hcq:d2 (6.5) BS02 rna ? GO:0000028 ... G1TIB4 30293783
    77 6hcq:d3 (6.5) BS01 rna ? GO:0002181 ... G1SHG0 30293783
    78 6hcq:e2 (6.5) BS01 rna ? GO:0003735 ... G1U7M4 30293783
    79 6hcq:e2 (6.5) BS02 ZN ? GO:0003735 ... G1U7M4 30293783
    80 6hcq:e3 (6.5) BS01 rna ? GO:0003735 ... G1TUN8 30293783
    81 6hcq:f2 (6.5) BS01 rna ? GO:0003735 ... G1T8A2 30293783
    82 6hcq:f3 (6.5) BS01 rna ? GO:0000049 ... G1SF08 30293783
    83 6hcq:g2 (6.5) BS01 rna ? GO:0003723 ... G1SK22 30293783
    84 6hcq:g2 (6.5) BS02 ZN ? GO:0003723 ... G1SK22 30293783
    85 6hcq:g3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    86 6hcq:h2 (6.5) BS01 rna ? GO:0001891 ... G1SJB4 30293783
    87 6hcq:h3 (6.5) BS01 rna ? GO:0000463 ... G1SIT5 30293783
    88 6hcq:h3 (6.5) BS02 rna ? GO:0000463 ... G1SIT5 30293783
    89 6hcq:i3 (6.5) BS01 rna ? GO:0002181 ... G1TTQ5 30293783
    90 6hcq:j3 (6.5) BS01 rna ? GO:0003723 ... U3KPD5 30293783
    91 6hcq:j3 (6.5) BS02 rna ? GO:0003723 ... U3KPD5 30293783
    92 6hcq:j3 (6.5) BS03 ZN ? GO:0003723 ... U3KPD5 30293783
    93 6hcq:k3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    94 6hcq:l3 (6.5) BS01 rna ? GO:0003735 ... G1TTN1 30293783
    95 6hcq:l3 (6.5) BS02 rna ? GO:0003735 ... G1TTN1 30293783
    96 6hcq:m3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    97 6hcq:m3 (6.5) BS02 ZN N/A GO:0003735 ... N/A 30293783
    98 6hcq:o3 (6.5) BS01 rna N/A GO:0003735 ... N/A 30293783
    99 6hcq:o3 (6.5) BS02 rna N/A GO:0003735 ... N/A 30293783
    100 6hcq:o3 (6.5) BS03 ZN N/A GO:0003735 ... N/A 30293783
    101 6hcq:p3 (6.5) BS01 rna ? GO:0003735 ... G1SY53 30293783
    102 6hcq:p3 (6.5) BS02 rna ? GO:0003735 ... G1SY53 30293783
    103 6hcq:p3 (6.5) BS03 ZN ? GO:0003735 ... G1SY53 30293783
    104 6hcq:r3 (6.5) BS01 rna ? GO:0003735 ... G1U7L1 30293783
    105 6hcq:t3 (6.5) BS01 rna N/A GO:0042254 ... N/A 30293783
    106 6hcq:u3 (6.5) BS01 rna ? GO:0003723 ... G1SMR7 30293783
    107 6hcq:w3 (6.5) BS01 rna ? GO:0000470 ... G1SKZ8 30293783
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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