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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6gzq:B2 (3.28) BS01 rna ? GO:0003735 ... P80371 30301898
    2 6gzq:C1 (3.28) BS01 rna ? GO:0002181 ... P60405 30301898
    3 6gzq:C2 (3.28) BS01 rna ? GO:0003676 ... P80372 30301898
    4 6gzq:D1 (3.28) BS01 rna ? GO:0003735 ... Q5SHN8 30301898
    5 6gzq:D2 (3.28) BS01 rna ? GO:0003723 ... P80373 30301898
    6 6gzq:E1 (3.28) BS01 rna ? GO:0003735 ... Q5SHN9 30301898
    7 6gzq:E2 (3.28) BS01 rna ? GO:0003723 ... Q5SHQ5 30301898
    8 6gzq:F1 (3.28) BS01 rna ? GO:0000049 ... Q5SHQ0 30301898
    9 6gzq:F1 (3.28) BS02 rna ? GO:0000049 ... Q5SHQ0 30301898
    10 6gzq:F2 (3.28) BS01 rna ? GO:0003735 ... Q5SLP8 30301898
    11 6gzq:G1 (3.28) BS01 rna ? GO:0002181 ... P0DOY8 30301898
    12 6gzq:G2 (3.28) BS01 rna ? GO:0000028 ... P17291 30301898
    13 6gzq:H1 (3.28) BS01 rna ? GO:0003735 ... Q5SLQ1 30301898
    14 6gzq:H2 (3.28) BS01 rna ? GO:0003735 ... P0DOY9 30301898
    15 6gzq:I1 (3.28) BS01 rna ? GO:0003729 ... P60488 30301898
    16 6gzq:I2 (3.28) BS01 rna ? GO:0000049 ... P80374 30301898
    17 6gzq:J1 (3.28) BS01 rna ? GO:0003735 ... Q5SHP8 30301898
    18 6gzq:J1 (3.28) BS02 rna ? GO:0003735 ... Q5SHP8 30301898
    19 6gzq:J2 (3.28) BS01 rna ? GO:0000049 ... Q5SHN7 30301898
    20 6gzq:K1 (3.28) BS01 rna ? GO:0003735 ... Q5SHQ7 30301898
    21 6gzq:K2 (3.28) BS01 rna ? GO:0003735 ... P80376 30301898
    22 6gzq:L1 (3.28) BS01 rna ? GO:0000049 ... P60489 30301898
    23 6gzq:L1 (3.28) BS02 rna ? GO:0000049 ... P60489 30301898
    24 6gzq:L2 (3.28) BS01 rna ? GO:0000049 ... Q5SHN3 30301898
    25 6gzq:M1 (3.28) BS01 rna ? GO:0003735 ... Q9Z9H5 30301898
    26 6gzq:M2 (3.28) BS01 rna ? GO:0000049 ... P80377 30301898
    27 6gzq:N1 (3.28) BS01 rna ? GO:0003735 ... Q5SHQ4 30301898
    28 6gzq:N1 (3.28) BS02 rna ? GO:0003735 ... Q5SHQ4 30301898
    29 6gzq:N2 (3.28) BS01 rna ? GO:0003735 ... P0DOY6 30301898
    30 6gzq:O1 (3.28) BS01 rna ? GO:0003735 ... P60490 30301898
    31 6gzq:O1 (3.28) BS02 rna ? GO:0003735 ... P60490 30301898
    32 6gzq:O2 (3.28) BS01 rna ? GO:0003735 ... Q5SJ76 30301898
    33 6gzq:P1 (3.28) BS01 rna ? GO:0000027 ... P60491 30301898
    34 6gzq:P2 (3.28) BS01 rna ? GO:0003735 ... Q5SJH3 30301898
    35 6gzq:Q1 (3.28) BS01 rna ? GO:0003723 ... P60492 30301898
    36 6gzq:Q2 (3.28) BS01 rna ? GO:0003735 ... P0DOY7 30301898
    37 6gzq:R1 (3.28) BS01 rna ? GO:0003735 ... Q5SHP3 30301898
    38 6gzq:R2 (3.28) BS01 rna ? GO:0003735 ... Q5SLQ0 30301898
    39 6gzq:S1 (3.28) BS01 rna ? GO:0000027 ... Q5SHP0 30301898
    40 6gzq:S2 (3.28) BS01 rna ? GO:0003723 ... Q5SHP2 30301898
    41 6gzq:T1 (3.28) BS01 rna ? GO:0003723 ... Q5SHP9 30301898
    42 6gzq:T2 (3.28) BS01 rna ? GO:0003723 ... P80380 30301898
    43 6gzq:U1 (3.28) BS01 rna ? GO:0003735 ... Q5SHZ1 30301898
    44 6gzq:U1 (3.28) BS02 rna ? GO:0003735 ... Q5SHZ1 30301898
    45 6gzq:V1 (3.28) BS01 rna ? GO:0003735 ... P60493 30301898
    46 6gzq:V2 (3.28) BS01 rna ? GO:0044238 ... Q5SIS0 30301898
    47 6gzq:W1 (3.28) BS01 rna ? GO:0003735 ... P60494 30301898
    48 6gzq:X1 (3.28) BS01 rna ? GO:0003735 ... Q5SHP6 30301898
    49 6gzq:Y1 (3.28) BS01 rna ? GO:0003735 ... Q5SHQ6 30301898
    50 6gzq:Z1 (3.28) BS01 rna ? GO:0003735 ... Q5SJE1 30301898
    51 6gzq:a1 (3.28) BS01 rna ? GO:0003735 ... P80339 30301898
    52 6gzq:b1 (3.28) BS01 rna ? GO:0003735 ... P35871 30301898
    53 6gzq:c1 (3.28) BS01 rna ? GO:0003735 ... P80340 30301898
    54 6gzq:d1 (3.28) BS01 rna ? GO:0003735 ... Q5SKU1 30301898
    55 6gzq:e1 (3.28) BS01 rna ? GO:0003735 ... Q5SHR2 30301898
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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