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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6gxm:0 (3.8) BS01 rna ? GO:0000027 ... P0A7N4 30076302
    2 6gxm:1 (3.8) BS01 rna ? GO:0000027 ... P0A7N9 30076302
    3 6gxm:2 (3.8) BS01 rna ? GO:0002181 ... P0A7P5 30076302
    4 6gxm:3 (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 30076302
    5 6gxm:4 (3.8) BS01 rna ? GO:0002181 ... P0A7Q6 30076302
    6 6gxm:5 (3.8) BS01 rna ? GO:0003735 ... P0A7J3 30076302
    7 6gxm:C (3.8) BS01 rna ? GO:0000027 ... P60422 30076302
    8 6gxm:C (3.8) BS02 rna ? GO:0000027 ... P60422 30076302
    9 6gxm:D (3.8) BS01 rna ? GO:0000027 ... P60438 30076302
    10 6gxm:E (3.8) BS01 rna ? GO:0001070 ... P60723 30076302
    11 6gxm:E (3.8) BS02 peptide ? GO:0001070 ... P60723 30076302
    12 6gxm:F (3.8) BS01 rna ? GO:0000027 ... P62399 30076302
    13 6gxm:F (3.8) BS02 rna ? GO:0000027 ... P62399 30076302
    14 6gxm:F (3.8) BS03 rna ? GO:0000027 ... P62399 30076302
    15 6gxm:G (3.8) BS01 rna ? GO:0000027 ... P0AG55 30076302
    16 6gxm:H (3.8) BS01 rna ? GO:0002181 ... P0A7R1 30076302
    17 6gxm:I (3.8) BS01 rna ? GO:0000027 ... P0A7J7 30076302
    18 6gxm:J (3.8) BS01 rna ? GO:0002181 ... P0AA10 30076302
    19 6gxm:K (3.8) BS01 rna ? GO:0002181 ... P0ADY3 30076302
    20 6gxm:K (3.8) BS02 rna ? GO:0002181 ... P0ADY3 30076302
    21 6gxm:L (3.8) BS01 rna ? GO:0002181 ... P02413 30076302
    22 6gxm:M (3.8) BS01 rna ? GO:0000027 ... P0ADY7 30076302
    23 6gxm:M (3.8) BS02 rna ? GO:0000027 ... P0ADY7 30076302
    24 6gxm:N (3.8) BS01 rna ? GO:0000027 ... P0AG44 30076302
    25 6gxm:O (3.8) BS01 rna ? GO:0002181 ... P0C018 30076302
    26 6gxm:O (3.8) BS02 rna ? GO:0002181 ... P0C018 30076302
    27 6gxm:P (3.8) BS01 rna ? GO:0000027 ... P0A7K6 30076302
    28 6gxm:P (3.8) BS02 rna ? GO:0000027 ... P0A7K6 30076302
    29 6gxm:Q (3.8) BS01 rna ? GO:0000027 ... P0A7L3 30076302
    30 6gxm:R (3.8) BS01 rna ? GO:0002181 ... P0AG48 30076302
    31 6gxm:S (3.8) BS01 rna ? GO:0002181 ... P61175 30076302
    32 6gxm:T (3.8) BS01 rna ? GO:0000027 ... P0ADZ0 30076302
    33 6gxm:U (3.8) BS01 rna ? GO:0000027 ... P60624 30076302
    34 6gxm:V (3.8) BS01 rna ? GO:0000027 ... P68919 30076302
    35 6gxm:W (3.8) BS01 rna ? GO:0003735 ... P0A7L8 30076302
    36 6gxm:W (3.8) BS02 rna ? GO:0003735 ... P0A7L8 30076302
    37 6gxm:X (3.8) BS01 rna ? GO:0000027 ... P0A7M2 30076302
    38 6gxm:Y (3.8) BS01 rna ? GO:0000027 ... P0A7M6 30076302
    39 6gxm:Z (3.8) BS01 rna ? GO:0000027 ... P0AG51 30076302
    40 6gxm:Z (3.8) BS02 rna ? GO:0000027 ... P0AG51 30076302
    41 6gxm:b (3.8) BS01 rna ? GO:0000028 ... P0A7V0 30076302
    42 6gxm:c (3.8) BS01 rna ? GO:0003676 ... P0A7V3 30076302
    43 6gxm:d (3.8) BS01 rna ? GO:0000028 ... P0A7V8 30076302
    44 6gxm:e (3.8) BS01 rna ? GO:0000028 ... P0A7W1 30076302
    45 6gxm:f (3.8) BS01 rna ? GO:0003735 ... P02358 30076302
    46 6gxm:g (3.8) BS01 rna ? GO:0003723 ... P02359 30076302
    47 6gxm:h (3.8) BS01 rna ? GO:0000028 ... P0A7W7 30076302
    48 6gxm:i (3.8) BS01 rna ? GO:0000049 ... P0A7X3 30076302
    49 6gxm:j (3.8) BS01 rna ? GO:0000049 ... P0A7R5 30076302
    50 6gxm:k (3.8) BS01 rna ? GO:0002181 ... P0A7R9 30076302
    51 6gxm:l (3.8) BS01 rna ? GO:0000049 ... P0A7S3 30076302
    52 6gxm:m (3.8) BS01 rna ? GO:0000049 ... P0A7S9 30076302
    53 6gxm:n (3.8) BS01 rna ? GO:0003735 ... P0AG59 30076302
    54 6gxm:o (3.8) BS01 rna ? GO:0000028 ... P0ADZ4 30076302
    55 6gxm:o (3.8) BS02 rna ? GO:0000028 ... P0ADZ4 30076302
    56 6gxm:p (3.8) BS01 rna ? GO:0000028 ... P0A7T3 30076302
    57 6gxm:q (3.8) BS01 rna ? GO:0000028 ... P0AG63 30076302
    58 6gxm:r (3.8) BS01 rna ? GO:0003735 ... P0A7T7 30076302
    59 6gxm:s (3.8) BS01 rna ? GO:0003723 ... P0A7U3 30076302
    60 6gxm:t (3.8) BS01 rna ? GO:0000028 ... P0A7U7 30076302
    61 6gxm:u (3.8) BS01 rna ? GO:0000028 ... P68679 30076302
    62 6gxm:v (3.8) BS01 rna ? GO:0003747 ... P0A7I0 30076302
    63 6gxm:v (3.8) BS02 rna ? GO:0003747 ... P0A7I0 30076302
    64 6gxm:v (3.8) BS03 rna ? GO:0003747 ... P0A7I0 30076302
    65 6gxm:v (3.8) BS04 rna ? GO:0003747 ... P0A7I0 30076302
    66 6gxm:w (3.8) BS01 rna ? GO:0003924 ... P0A7I4 30076302
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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