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BioLiP
Download all results in tab-seperated text for 110 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6gqv:A (4.0) BS01 rna ? GO:0002181 ... P0CX45 29886014
    2 6gqv:A (4.0) BS02 rna ? GO:0002181 ... P0CX45 29886014
    3 6gqv:AA (4.0) BS01 rna ? GO:0000054 ... Q08745 29886014
    4 6gqv:AB (4.0) BS01 rna ? GO:0000028 ... P0CX47 29886014
    5 6gqv:AC (4.0) BS01 rna ? GO:0003735 ... P48589 29886014
    6 6gqv:AD (4.0) BS01 rna ? GO:0000462 ... P05756 29886014
    7 6gqv:AE (4.0) BS01 rna ? GO:0000028 ... P39516 29886014
    8 6gqv:AF (4.0) BS01 rna ? GO:0003723 ... Q01855 29886014
    9 6gqv:AG (4.0) BS01 rna ? GO:0000462 ... P0CX51 29886014
    10 6gqv:AH (4.0) BS01 rna ? GO:0000028 ... P14127 29886014
    11 6gqv:AI (4.0) BS01 rna ? GO:0000054 ... P0CX55 29886014
    12 6gqv:AJ (4.0) BS01 rna ? GO:0000028 ... P07280 29886014
    13 6gqv:AK (4.0) BS01 rna ? GO:0003723 ... P38701 29886014
    14 6gqv:AL (4.0) BS01 rna ? GO:0000447 ... P0C0V8 29886014
    15 6gqv:AM (4.0) BS01 rna ? GO:0002181 ... P0C0W1 29886014
    16 6gqv:AN (4.0) BS01 rna ? GO:0000462 ... P0CX29 29886014
    17 6gqv:AO (4.0) BS01 rna ? GO:0000462 ... P0CX31 29886014
    18 6gqv:AP (4.0) BS01 rna ? N/A Q3E792 29886014
    19 6gqv:AQ (4.0) BS01 rna ? GO:0003735 ... P39939 29886014
    20 6gqv:AQ (4.0) BS02 ZN ? GO:0003735 ... P39939 29886014
    21 6gqv:AR (4.0) BS01 rna ? GO:0000028 ... P35997 29886014
    22 6gqv:AR (4.0) BS02 ZN ? GO:0000028 ... P35997 29886014
    23 6gqv:AS (4.0) BS01 rna ? GO:0000028 ... Q3E7X9 29886014
    24 6gqv:AT (4.0) BS01 rna ? GO:0002181 ... P41057 29886014
    25 6gqv:AT (4.0) BS02 ZN ? GO:0002181 ... P41057 29886014
    26 6gqv:AU (4.0) BS01 rna ? GO:0002181 ... P0CX33 29886014
    27 6gqv:AV (4.0) BS01 rna ? GO:0001965 ... P38011 29886014
    28 6gqv:AW (4.0) BS01 rna ? GO:0003735 ... P05759 29886014
    29 6gqv:AW (4.0) BS02 ZN ? GO:0003735 ... P05759 29886014
    30 6gqv:AX (4.0) BS01 rna 3.6.5.- GO:0003746 ... P32324 29886014
    31 6gqv:AX (4.0) BS02 rna 3.6.5.- GO:0003746 ... P32324 29886014
    32 6gqv:B (4.0) BS01 rna ? GO:0000027 ... P14126 29886014
    33 6gqv:BA (4.0) BS01 rna ? GO:0000055 ... P0CX43 29886014
    34 6gqv:BA (4.0) BS02 rna ? GO:0000055 ... P0CX43 29886014
    35 6gqv:C (4.0) BS01 rna ? GO:0002181 ... P10664 29886014
    36 6gqv:C (4.0) BS02 rna ? GO:0002181 ... P10664 29886014
    37 6gqv:D (4.0) BS01 rna ? GO:0000027 ... P26321 29886014
    38 6gqv:D (4.0) BS02 rna ? GO:0000027 ... P26321 29886014
    39 6gqv:E (4.0) BS01 rna ? GO:0000027 ... Q02326 29886014
    40 6gqv:F (4.0) BS01 rna ? GO:0000463 ... P05737 29886014
    41 6gqv:F (4.0) BS02 rna ? GO:0000463 ... P05737 29886014
    42 6gqv:G (4.0) BS01 rna ? GO:0000470 ... P17076 29886014
    43 6gqv:G (4.0) BS02 rna ? GO:0000470 ... P17076 29886014
    44 6gqv:H (4.0) BS01 rna ? GO:0002181 ... P05738 29886014
    45 6gqv:I (4.0) BS01 rna ? GO:0000027 ... P41805 29886014
    46 6gqv:I (4.0) BS02 rna ? GO:0000027 ... P41805 29886014
    47 6gqv:J (4.0) BS01 rna ? GO:0000027 ... Q3E757 29886014
    48 6gqv:J (4.0) BS02 rna ? GO:0000027 ... Q3E757 29886014
    49 6gqv:L (4.0) BS01 rna ? GO:0002181 ... Q12690 29886014
    50 6gqv:L (4.0) BS02 rna ? GO:0002181 ... Q12690 29886014
    51 6gqv:M (4.0) BS01 rna ? GO:0000027 ... P36105 29886014
    52 6gqv:N (4.0) BS01 rna ? GO:0002181 ... P05748 29886014
    53 6gqv:N (4.0) BS02 rna ? GO:0002181 ... P05748 29886014
    54 6gqv:O (4.0) BS01 rna ? GO:0000470 ... P26784 29886014
    55 6gqv:P (4.0) BS01 rna ? GO:0000448 ... P05740 29886014
    56 6gqv:P (4.0) BS02 rna ? GO:0000448 ... P05740 29886014
    57 6gqv:P0 (4.0) BS01 rna ? N/A P05317 29886014
    58 6gqv:P2 (4.0) BS01 rna ? GO:0003735 ... P0CX53 29886014
    59 6gqv:Q (4.0) BS01 rna ? GO:0002181 ... P0CX49 29886014
    60 6gqv:R (4.0) BS01 rna ? GO:0002181 ... P0CX82 29886014
    61 6gqv:R (4.0) BS02 rna ? GO:0002181 ... P0CX82 29886014
    62 6gqv:S (4.0) BS01 rna ? GO:0002181 ... P0CX23 29886014
    63 6gqv:S (4.0) BS02 rna ? GO:0002181 ... P0CX23 29886014
    64 6gqv:T (4.0) BS01 rna ? GO:0002181 ... Q02753 29886014
    65 6gqv:T (4.0) BS02 rna ? GO:0002181 ... Q02753 29886014
    66 6gqv:U (4.0) BS01 rna ? GO:0003735 ... P05749 29886014
    67 6gqv:V (4.0) BS01 rna ? GO:0002181 ... P0CX41 29886014
    68 6gqv:V (4.0) BS02 rna ? GO:0002181 ... P0CX41 29886014
    69 6gqv:W (4.0) BS01 rna ? N/A P04449 29886014
    70 6gqv:X (4.0) BS01 rna ? GO:0003735 ... P04456 29886014
    71 6gqv:X (4.0) BS02 rna ? GO:0003735 ... P04456 29886014
    72 6gqv:Y (4.0) BS01 rna ? GO:0002181 ... P05743 29886014
    73 6gqv:Y (4.0) BS02 rna ? GO:0002181 ... P05743 29886014
    74 6gqv:Z (4.0) BS01 rna ? GO:0002181 ... P0C2H6 29886014
    75 6gqv:a (4.0) BS01 rna ? GO:0002181 ... P02406 29886014
    76 6gqv:b (4.0) BS01 rna ? GO:0002181 ... P05747 29886014
    77 6gqv:c (4.0) BS01 rna ? GO:0002181 ... P14120 29886014
    78 6gqv:d (4.0) BS01 rna ? GO:0002181 ... P0C2H8 29886014
    79 6gqv:e (4.0) BS01 rna ? GO:0002181 ... P38061 29886014
    80 6gqv:f (4.0) BS01 rna ? GO:0000027 ... P05744 29886014
    81 6gqv:g (4.0) BS01 rna ? GO:0002181 ... P87262 29886014
    82 6gqv:h (4.0) BS01 rna ? GO:0000463 ... P0CX84 29886014
    83 6gqv:h (4.0) BS02 rna ? GO:0000463 ... P0CX84 29886014
    84 6gqv:i (4.0) BS01 rna ? GO:0002181 ... P05745 29886014
    85 6gqv:j (4.0) BS01 rna ? GO:0000448 ... P49166 29886014
    86 6gqv:j (4.0) BS02 rna ? GO:0000448 ... P49166 29886014
    87 6gqv:j (4.0) BS03 ZN ? GO:0000448 ... P49166 29886014
    88 6gqv:k (4.0) BS01 rna ? GO:0002181 ... P49167 29886014
    89 6gqv:l (4.0) BS01 rna ? GO:0002181 ... P04650 29886014
    90 6gqv:l (4.0) BS02 rna ? GO:0002181 ... P04650 29886014
    91 6gqv:m (4.0) BS01 rna ? GO:0003735 ... P0CH08 29886014
    92 6gqv:m (4.0) BS02 ZN ? GO:0003735 ... P0CH08 29886014
    93 6gqv:o (4.0) BS01 rna ? GO:0002181 ... P0CX27 29886014
    94 6gqv:o (4.0) BS02 rna ? GO:0002181 ... P0CX27 29886014
    95 6gqv:o (4.0) BS03 ZN ? GO:0002181 ... P0CX27 29886014
    96 6gqv:p (4.0) BS01 rna ? GO:0002181 ... P0CX25 29886014
    97 6gqv:p (4.0) BS02 rna ? GO:0002181 ... P0CX25 29886014
    98 6gqv:p (4.0) BS03 ZN ? GO:0002181 ... P0CX25 29886014
    99 6gqv:q (4.0) BS01 rna ? GO:0003735 ... P32905 29886014
    100 6gqv:r (4.0) BS01 rna ? GO:0003735 ... P33442 29886014
    101 6gqv:r (4.0) BS02 rna ? GO:0003735 ... P33442 29886014
    102 6gqv:s (4.0) BS01 rna ? GO:0003723 ... P25443 29886014
    103 6gqv:t (4.0) BS01 rna ? GO:0000054 ... P05750 29886014
    104 6gqv:u (4.0) BS01 rna ? GO:0002181 ... P0CX35 29886014
    105 6gqv:v (4.0) BS01 rna ? GO:0000028 ... P26783 29886014
    106 6gqv:w (4.0) BS01 rna ? GO:0000462 ... P0CX37 29886014
    107 6gqv:x (4.0) BS01 rna ? GO:0002181 ... P26786 29886014
    108 6gqv:y (4.0) BS01 rna ? GO:0000462 ... P0CX39 29886014
    109 6gqv:y (4.0) BS02 rna ? GO:0000462 ... P0CX39 29886014
    110 6gqv:z (4.0) BS01 rna ? GO:0000462 ... O13516 29886014
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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