Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6g5m:A (2.31) BS01 CU ? N/A W0DP94 N/A
    2 6g5m:A (2.31) BS02 CU ? N/A W0DP94 N/A
    3 6g5m:A (2.31) BS03 CU ? N/A W0DP94 N/A
    4 6g5m:A (2.31) BS04 CU ? N/A W0DP94 N/A
    5 6g5m:A (2.31) BS05 CU ? N/A W0DP94 N/A
    6 6g5m:B (2.31) BS01 CU ? N/A W0DP94 N/A
    7 6g5m:B (2.31) BS02 CU ? N/A W0DP94 N/A
    8 6g5m:B (2.31) BS03 CU ? N/A W0DP94 N/A
    9 6g5m:B (2.31) BS04 CU ? N/A W0DP94 N/A
    10 6g5m:B (2.31) BS05 CU ? N/A W0DP94 N/A
    11 6g5m:C (2.31) BS01 CU ? N/A W0DP94 N/A
    12 6g5m:C (2.31) BS02 CU ? N/A W0DP94 N/A
    13 6g5m:C (2.31) BS03 CU ? N/A W0DP94 N/A
    14 6g5m:C (2.31) BS04 CU ? N/A W0DP94 N/A
    15 6g5m:C (2.31) BS05 CU ? N/A W0DP94 N/A
    16 6g5m:C (2.31) BS06 CU ? N/A W0DP94 N/A
    17 6g5m:D (2.31) BS01 CU ? N/A W0DP94 N/A
    18 6g5m:D (2.31) BS02 CU ? N/A W0DP94 N/A
    19 6g5m:D (2.31) BS03 CU ? N/A W0DP94 N/A
    20 6g5m:D (2.31) BS04 CU ? N/A W0DP94 N/A
    21 6g5m:D (2.31) BS05 CU ? N/A W0DP94 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218