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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 241 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6fkr:10 (3.2) BS01 rna ? GO:0003735 ... P60493 29526712
    2 6fkr:10 (3.2) BS02 rna ? GO:0003735 ... P60493 29526712
    3 6fkr:10 (3.2) BS03 MG ? GO:0003735 ... P60493 29526712
    4 6fkr:10 (3.2) BS04 MG ? GO:0003735 ... P60493 29526712
    5 6fkr:11 (3.2) BS01 rna ? GO:0003735 ... P60494 29526712
    6 6fkr:11 (3.2) BS02 MG ? GO:0003735 ... P60494 29526712
    7 6fkr:12 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 29526712
    8 6fkr:13 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 29526712
    9 6fkr:13 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 29526712
    10 6fkr:13 (3.2) BS03 MG ? GO:0003735 ... Q5SHQ6 29526712
    11 6fkr:13 (3.2) BS04 MG ? GO:0003735 ... Q5SHQ6 29526712
    12 6fkr:14 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 29526712
    13 6fkr:14 (3.2) BS02 ZN ? GO:0003735 ... Q5SJE1 29526712
    14 6fkr:15 (3.2) BS01 rna ? GO:0003735 ... P80339 29526712
    15 6fkr:15 (3.2) BS02 ZN ? GO:0003735 ... P80339 29526712
    16 6fkr:16 (3.2) BS01 rna ? GO:0000049 ... P35871 29526712
    17 6fkr:16 (3.2) BS02 ZN ? GO:0000049 ... P35871 29526712
    18 6fkr:17 (3.2) BS01 rna ? GO:0003735 ... P80340 29526712
    19 6fkr:17 (3.2) BS02 MG ? GO:0003735 ... P80340 29526712
    20 6fkr:18 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 29526712
    21 6fkr:18 (3.2) BS02 MG ? GO:0003735 ... Q5SKU1 29526712
    22 6fkr:18 (3.2) BS03 MG ? GO:0003735 ... Q5SKU1 29526712
    23 6fkr:19 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 29526712
    24 6fkr:19 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 29526712
    25 6fkr:1D (3.2) BS01 rna ? GO:0002181 ... P60405 29526712
    26 6fkr:1D (3.2) BS02 MG ? GO:0002181 ... P60405 29526712
    27 6fkr:1D (3.2) BS03 MG ? GO:0002181 ... P60405 29526712
    28 6fkr:1D (3.2) BS04 MG ? GO:0002181 ... P60405 29526712
    29 6fkr:1D (3.2) BS05 MG ? GO:0002181 ... P60405 29526712
    30 6fkr:1D (3.2) BS06 MG ? GO:0002181 ... P60405 29526712
    31 6fkr:1D (3.2) BS07 MG ? GO:0002181 ... P60405 29526712
    32 6fkr:1D (3.2) BS08 MG ? GO:0002181 ... P60405 29526712
    33 6fkr:1D (3.2) BS09 MG ? GO:0002181 ... P60405 29526712
    34 6fkr:1E (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 29526712
    35 6fkr:1E (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 29526712
    36 6fkr:1E (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 29526712
    37 6fkr:1E (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 29526712
    38 6fkr:1F (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 29526712
    39 6fkr:1F (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 29526712
    40 6fkr:1F (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 29526712
    41 6fkr:1F (3.2) BS04 MG ? GO:0003735 ... Q5SHN9 29526712
    42 6fkr:1F (3.2) BS05 MG ? GO:0003735 ... Q5SHN9 29526712
    43 6fkr:1F (3.2) BS06 MG ? GO:0003735 ... Q5SHN9 29526712
    44 6fkr:1F (3.2) BS07 MG ? GO:0003735 ... Q5SHN9 29526712
    45 6fkr:1F (3.2) BS08 MG ? GO:0003735 ... Q5SHN9 29526712
    46 6fkr:1F (3.2) BS09 MG ? GO:0003735 ... Q5SHN9 29526712
    47 6fkr:1F (3.2) BS10 MG ? GO:0003735 ... Q5SHN9 29526712
    48 6fkr:1F (3.2) BS11 MG ? GO:0003735 ... Q5SHN9 29526712
    49 6fkr:1F (3.2) BS12 MG ? GO:0003735 ... Q5SHN9 29526712
    50 6fkr:1G (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 29526712
    51 6fkr:1G (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 29526712
    52 6fkr:1G (3.2) BS03 MG ? GO:0000049 ... Q5SHQ0 29526712
    53 6fkr:1G (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 29526712
    54 6fkr:1G (3.2) BS05 MG ? GO:0000049 ... Q5SHQ0 29526712
    55 6fkr:1H (3.2) BS01 rna ? GO:0002181 ... P0DOY8 29526712
    56 6fkr:1I (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 29526712
    57 6fkr:1N (3.2) BS01 rna ? GO:0003729 ... P60488 29526712
    58 6fkr:1O (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 29526712
    59 6fkr:1O (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 29526712
    60 6fkr:1P (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 29526712
    61 6fkr:1P (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 29526712
    62 6fkr:1P (3.2) BS03 MG ? GO:0003735 ... Q5SHQ7 29526712
    63 6fkr:1P (3.2) BS04 MG ? GO:0003735 ... Q5SHQ7 29526712
    64 6fkr:1Q (3.2) BS01 rna ? GO:0000049 ... P60489 29526712
    65 6fkr:1Q (3.2) BS02 rna ? GO:0000049 ... P60489 29526712
    66 6fkr:1Q (3.2) BS03 MG ? GO:0000049 ... P60489 29526712
    67 6fkr:1Q (3.2) BS04 MG ? GO:0000049 ... P60489 29526712
    68 6fkr:1Q (3.2) BS05 MG ? GO:0000049 ... P60489 29526712
    69 6fkr:1R (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 29526712
    70 6fkr:1R (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 29526712
    71 6fkr:1R (3.2) BS03 MG ? GO:0003735 ... Q9Z9H5 29526712
    72 6fkr:1S (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 29526712
    73 6fkr:1S (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 29526712
    74 6fkr:1T (3.2) BS01 rna ? GO:0003735 ... P60490 29526712
    75 6fkr:1T (3.2) BS02 rna ? GO:0003735 ... P60490 29526712
    76 6fkr:1U (3.2) BS01 rna ? GO:0000027 ... P60491 29526712
    77 6fkr:1U (3.2) BS02 MG ? GO:0000027 ... P60491 29526712
    78 6fkr:1U (3.2) BS03 MG ? GO:0000027 ... P60491 29526712
    79 6fkr:1U (3.2) BS04 MG ? GO:0000027 ... P60491 29526712
    80 6fkr:1U (3.2) BS05 MG ? GO:0000027 ... P60491 29526712
    81 6fkr:1U (3.2) BS06 MG ? GO:0000027 ... P60491 29526712
    82 6fkr:1V (3.2) BS01 rna ? GO:0003723 ... P60492 29526712
    83 6fkr:1V (3.2) BS02 MG ? GO:0003723 ... P60492 29526712
    84 6fkr:1V (3.2) BS03 MG ? GO:0003723 ... P60492 29526712
    85 6fkr:1V (3.2) BS04 MG ? GO:0003723 ... P60492 29526712
    86 6fkr:1W (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 29526712
    87 6fkr:1W (3.2) BS02 MG ? GO:0003735 ... Q5SHP3 29526712
    88 6fkr:1X (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 29526712
    89 6fkr:1Y (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 29526712
    90 6fkr:1Y (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 29526712
    91 6fkr:1Z (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 29526712
    92 6fkr:1Z (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 29526712
    93 6fkr:1b (3.2) BS01 rna ? GO:0003735 ... P80371 29526712
    94 6fkr:1b (3.2) BS02 MG ? GO:0003735 ... P80371 29526712
    95 6fkr:1c (3.2) BS01 rna ? GO:0003676 ... P80372 29526712
    96 6fkr:1d (3.2) BS01 rna ? GO:0003723 ... P80373 29526712
    97 6fkr:1d (3.2) BS02 SF4 ? GO:0003723 ... P80373 29526712
    98 6fkr:1e (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 29526712
    99 6fkr:1e (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 29526712
    100 6fkr:1f (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 29526712
    101 6fkr:1g (3.2) BS01 rna ? GO:0000028 ... P17291 29526712
    102 6fkr:1h (3.2) BS01 rna ? GO:0003735 ... P0DOY9 29526712
    103 6fkr:1i (3.2) BS01 rna ? GO:0000049 ... P80374 29526712
    104 6fkr:1j (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 29526712
    105 6fkr:1k (3.2) BS01 rna ? GO:0003735 ... P80376 29526712
    106 6fkr:1l (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 29526712
    107 6fkr:1l (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 29526712
    108 6fkr:1m (3.2) BS01 rna ? GO:0000049 ... P80377 29526712
    109 6fkr:1m (3.2) BS02 rna ? GO:0000049 ... P80377 29526712
    110 6fkr:1m (3.2) BS03 MG ? GO:0000049 ... P80377 29526712
    111 6fkr:1n (3.2) BS01 rna ? GO:0003735 ... P0DOY6 29526712
    112 6fkr:1n (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 29526712
    113 6fkr:1n (3.2) BS03 MG ? GO:0003735 ... P0DOY6 29526712
    114 6fkr:1o (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 29526712
    115 6fkr:1o (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 29526712
    116 6fkr:1p (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 29526712
    117 6fkr:1q (3.2) BS01 rna ? GO:0003735 ... P0DOY7 29526712
    118 6fkr:1r (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 29526712
    119 6fkr:1s (3.2) BS01 rna ? GO:0003723 ... Q5SHP2 29526712
    120 6fkr:1t (3.2) BS01 rna ? GO:0003723 ... P80380 29526712
    121 6fkr:1z (3.2) BS01 rna ? GO:0044238 ... P0AD49 29526712
    122 6fkr:20 (3.2) BS01 rna ? GO:0003735 ... P60493 29526712
    123 6fkr:20 (3.2) BS02 rna ? GO:0003735 ... P60493 29526712
    124 6fkr:20 (3.2) BS03 MG ? GO:0003735 ... P60493 29526712
    125 6fkr:20 (3.2) BS04 MG ? GO:0003735 ... P60493 29526712
    126 6fkr:21 (3.2) BS01 rna ? GO:0003735 ... P60494 29526712
    127 6fkr:22 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 29526712
    128 6fkr:23 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 29526712
    129 6fkr:23 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 29526712
    130 6fkr:23 (3.2) BS03 MG ? GO:0003735 ... Q5SHQ6 29526712
    131 6fkr:23 (3.2) BS04 MG ? GO:0003735 ... Q5SHQ6 29526712
    132 6fkr:23 (3.2) BS05 MG ? GO:0003735 ... Q5SHQ6 29526712
    133 6fkr:24 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 29526712
    134 6fkr:24 (3.2) BS02 ZN ? GO:0003735 ... Q5SJE1 29526712
    135 6fkr:25 (3.2) BS01 rna ? GO:0003735 ... P80339 29526712
    136 6fkr:25 (3.2) BS02 MG ? GO:0003735 ... P80339 29526712
    137 6fkr:25 (3.2) BS03 ZN ? GO:0003735 ... P80339 29526712
    138 6fkr:26 (3.2) BS01 rna ? GO:0000049 ... P35871 29526712
    139 6fkr:26 (3.2) BS02 ZN ? GO:0000049 ... P35871 29526712
    140 6fkr:27 (3.2) BS01 rna ? GO:0003735 ... P80340 29526712
    141 6fkr:27 (3.2) BS02 MG ? GO:0003735 ... P80340 29526712
    142 6fkr:28 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 29526712
    143 6fkr:28 (3.2) BS02 MG ? GO:0003735 ... Q5SKU1 29526712
    144 6fkr:29 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 29526712
    145 6fkr:29 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 29526712
    146 6fkr:2D (3.2) BS01 rna ? GO:0002181 ... P60405 29526712
    147 6fkr:2D (3.2) BS02 MG ? GO:0002181 ... P60405 29526712
    148 6fkr:2D (3.2) BS03 MG ? GO:0002181 ... P60405 29526712
    149 6fkr:2D (3.2) BS04 MG ? GO:0002181 ... P60405 29526712
    150 6fkr:2D (3.2) BS05 MG ? GO:0002181 ... P60405 29526712
    151 6fkr:2D (3.2) BS06 MG ? GO:0002181 ... P60405 29526712
    152 6fkr:2D (3.2) BS07 MG ? GO:0002181 ... P60405 29526712
    153 6fkr:2D (3.2) BS08 MG ? GO:0002181 ... P60405 29526712
    154 6fkr:2D (3.2) BS09 MG ? GO:0002181 ... P60405 29526712
    155 6fkr:2D (3.2) BS10 MG ? GO:0002181 ... P60405 29526712
    156 6fkr:2D (3.2) BS11 MG ? GO:0002181 ... P60405 29526712
    157 6fkr:2D (3.2) BS12 MG ? GO:0002181 ... P60405 29526712
    158 6fkr:2E (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 29526712
    159 6fkr:2E (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 29526712
    160 6fkr:2E (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 29526712
    161 6fkr:2E (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 29526712
    162 6fkr:2E (3.2) BS05 MG ? GO:0003735 ... Q5SHN8 29526712
    163 6fkr:2F (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 29526712
    164 6fkr:2F (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 29526712
    165 6fkr:2F (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 29526712
    166 6fkr:2F (3.2) BS04 MG ? GO:0003735 ... Q5SHN9 29526712
    167 6fkr:2F (3.2) BS05 MG ? GO:0003735 ... Q5SHN9 29526712
    168 6fkr:2F (3.2) BS06 MG ? GO:0003735 ... Q5SHN9 29526712
    169 6fkr:2F (3.2) BS07 MG ? GO:0003735 ... Q5SHN9 29526712
    170 6fkr:2F (3.2) BS08 MG ? GO:0003735 ... Q5SHN9 29526712
    171 6fkr:2F (3.2) BS09 MG ? GO:0003735 ... Q5SHN9 29526712
    172 6fkr:2G (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 29526712
    173 6fkr:2G (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 29526712
    174 6fkr:2G (3.2) BS03 MG ? GO:0000049 ... Q5SHQ0 29526712
    175 6fkr:2G (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 29526712
    176 6fkr:2G (3.2) BS05 MG ? GO:0000049 ... Q5SHQ0 29526712
    177 6fkr:2H (3.2) BS01 rna ? GO:0002181 ... P0DOY8 29526712
    178 6fkr:2I (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 29526712
    179 6fkr:2N (3.2) BS01 rna ? GO:0003729 ... P60488 29526712
    180 6fkr:2O (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 29526712
    181 6fkr:2O (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 29526712
    182 6fkr:2P (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 29526712
    183 6fkr:2P (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 29526712
    184 6fkr:2Q (3.2) BS01 rna ? GO:0000049 ... P60489 29526712
    185 6fkr:2Q (3.2) BS02 rna ? GO:0000049 ... P60489 29526712
    186 6fkr:2Q (3.2) BS03 MG ? GO:0000049 ... P60489 29526712
    187 6fkr:2Q (3.2) BS04 MG ? GO:0000049 ... P60489 29526712
    188 6fkr:2Q (3.2) BS05 MG ? GO:0000049 ... P60489 29526712
    189 6fkr:2R (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 29526712
    190 6fkr:2R (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 29526712
    191 6fkr:2R (3.2) BS03 MG ? GO:0003735 ... Q9Z9H5 29526712
    192 6fkr:2S (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 29526712
    193 6fkr:2S (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 29526712
    194 6fkr:2T (3.2) BS01 rna ? GO:0003735 ... P60490 29526712
    195 6fkr:2T (3.2) BS02 rna ? GO:0003735 ... P60490 29526712
    196 6fkr:2U (3.2) BS01 rna ? GO:0000027 ... P60491 29526712
    197 6fkr:2U (3.2) BS02 MG ? GO:0000027 ... P60491 29526712
    198 6fkr:2U (3.2) BS03 MG ? GO:0000027 ... P60491 29526712
    199 6fkr:2U (3.2) BS04 MG ? GO:0000027 ... P60491 29526712
    200 6fkr:2U (3.2) BS05 MG ? GO:0000027 ... P60491 29526712
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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