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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6esh:A (5.1) BS01 dna ? GO:0000786 ... P84233 29323273
    2 6esh:A (5.1) BS02 dna ? GO:0000786 ... P84233 29323273
    3 6esh:B (5.1) BS01 dna ? GO:0000786 ... P62799 29323273
    4 6esh:B (5.1) BS02 dna ? GO:0000786 ... P62799 29323273
    5 6esh:C (5.1) BS01 dna ? GO:0000786 ... Q6AZJ8 29323273
    6 6esh:C (5.1) BS02 dna ? GO:0000786 ... Q6AZJ8 29323273
    7 6esh:D (5.1) BS01 dna ? GO:0000786 ... P02281 29323273
    8 6esh:E (5.1) BS01 dna ? GO:0000786 ... P84233 29323273
    9 6esh:E (5.1) BS02 dna ? GO:0000786 ... P84233 29323273
    10 6esh:F (5.1) BS01 dna ? GO:0000786 ... P62799 29323273
    11 6esh:F (5.1) BS02 dna ? GO:0000786 ... P62799 29323273
    12 6esh:G (5.1) BS01 dna ? GO:0000786 ... Q6AZJ8 29323273
    13 6esh:G (5.1) BS02 dna ? GO:0000786 ... Q6AZJ8 29323273
    14 6esh:H (5.1) BS01 dna ? GO:0000786 ... P02281 29323273
    15 6esh:H (5.1) BS02 dna ? GO:0000786 ... P02281 29323273
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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