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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6elz:A (3.3) BS01 rna ? GO:0000027 ... Q08235 29245012
    2 6elz:B (3.3) BS01 rna ? GO:0000027 ... P14126 29245012
    3 6elz:C (3.3) BS01 rna ? GO:0002181 ... P10664 29245012
    4 6elz:C (3.3) BS02 rna ? GO:0002181 ... P10664 29245012
    5 6elz:D (3.3) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 29245012
    6 6elz:E (3.3) BS01 rna ? GO:0000027 ... Q02326 29245012
    7 6elz:F (3.3) BS01 rna ? GO:0000463 ... P05737 29245012
    8 6elz:G (3.3) BS01 rna ? GO:0000470 ... P17076 29245012
    9 6elz:G (3.3) BS02 rna ? GO:0000470 ... P17076 29245012
    10 6elz:G (3.3) BS03 rna ? GO:0000470 ... P17076 29245012
    11 6elz:H (3.3) BS01 rna ? GO:0002181 ... P05738 29245012
    12 6elz:I (3.3) BS01 rna ? GO:0003682 ... Q07896 29245012
    13 6elz:J (3.3) BS01 rna ? GO:0000280 ... P36049 29245012
    14 6elz:K (3.3) BS01 rna ? GO:0000462 ... P38779 29245012
    15 6elz:L (3.3) BS01 rna ? GO:0002181 ... Q12690 29245012
    16 6elz:L (3.3) BS02 rna ? GO:0002181 ... Q12690 29245012
    17 6elz:M (3.3) BS01 rna ? GO:0000027 ... P36105 29245012
    18 6elz:N (3.3) BS01 rna ? GO:0002181 ... P05748 29245012
    19 6elz:N (3.3) BS02 rna ? GO:0002181 ... P05748 29245012
    20 6elz:O (3.3) BS01 rna ? GO:0000470 ... P26784 29245012
    21 6elz:P (3.3) BS01 rna ? GO:0000448 ... P05740 29245012
    22 6elz:P (3.3) BS02 rna ? GO:0000448 ... P05740 29245012
    23 6elz:Q (3.3) BS01 rna ? GO:0002181 ... P0CX49 29245012
    24 6elz:R (3.3) BS01 rna ? GO:0002181 ... P0CX82 29245012
    25 6elz:S (3.3) BS01 rna ? GO:0002181 ... P0CX23 29245012
    26 6elz:T (3.3) BS01 rna ? GO:0002181 ... Q02753 29245012
    27 6elz:U (3.3) BS01 rna ? GO:0002181 ... P05749 29245012
    28 6elz:V (3.3) BS01 rna ? GO:0002181 ... P0CX41 29245012
    29 6elz:W (3.3) BS01 rna ? GO:0000027 ... P33201 29245012
    30 6elz:X (3.3) BS01 rna ? GO:0000027 ... P04456 29245012
    31 6elz:X (3.3) BS02 rna ? GO:0000027 ... P04456 29245012
    32 6elz:Y (3.3) BS01 rna ? GO:0002181 ... P05743 29245012
    33 6elz:Y (3.3) BS02 rna ? GO:0002181 ... P05743 29245012
    34 6elz:Z (3.3) BS01 rna ? GO:0002181 ... P0C2H6 29245012
    35 6elz:a (3.3) BS01 rna ? GO:0002181 ... P02406 29245012
    36 6elz:b (3.3) BS01 rna ? GO:0000054 ... Q02892 29245012
    37 6elz:c (3.3) BS01 rna ? GO:0002181 ... P14120 29245012
    38 6elz:d (3.3) BS01 rna ? GO:0002181 ... P0C2H8 29245012
    39 6elz:e (3.3) BS01 rna ? GO:0002181 ... P38061 29245012
    40 6elz:f (3.3) BS01 rna ? GO:0000027 ... P05744 29245012
    41 6elz:g (3.3) BS01 rna ? GO:0002181 ... P87262 29245012
    42 6elz:h (3.3) BS01 rna ? GO:0000463 ... P0CX84 29245012
    43 6elz:h (3.3) BS02 rna ? GO:0000463 ... P0CX84 29245012
    44 6elz:i (3.3) BS01 rna ? GO:0002181 ... P05745 29245012
    45 6elz:j (3.3) BS01 rna ? GO:0000448 ... P49166 29245012
    46 6elz:j (3.3) BS02 rna ? GO:0000448 ... P49166 29245012
    47 6elz:j (3.3) BS03 ZN ? GO:0000448 ... P49166 29245012
    48 6elz:k (3.3) BS01 rna ? GO:0002181 ... P49167 29245012
    49 6elz:l (3.3) BS01 rna ? GO:0000463 ... Q08962 29245012
    50 6elz:m (3.3) BS01 rna ? GO:0000463 ... Q04660 29245012
    51 6elz:m (3.3) BS02 rna ? GO:0000463 ... Q04660 29245012
    52 6elz:n (3.3) BS01 rna ? GO:0000462 ... P53261 29245012
    53 6elz:n (3.3) BS02 rna ? GO:0000462 ... P53261 29245012
    54 6elz:o (3.3) BS01 rna ? GO:0000463 ... P53927 29245012
    55 6elz:q (3.3) BS01 rna 2.1.1.310 GO:0000463 ... P40991 29245012
    56 6elz:r (3.3) BS01 rna ? GO:0000460 ... P40078 29245012
    57 6elz:s (3.3) BS01 rna ? GO:0000055 ... P40010 29245012
    58 6elz:t (3.3) BS01 rna ? GO:0000463 ... P40693 29245012
    59 6elz:t (3.3) BS02 rna ? GO:0000463 ... P40693 29245012
    60 6elz:t (3.3) BS03 rna ? GO:0000463 ... P40693 29245012
    61 6elz:u (3.3) BS01 rna ? GO:0001671 ... Q07915 29245012
    62 6elz:v (3.3) BS01 rna ? GO:0003674 ... P40007 29245012
    63 6elz:v (3.3) BS02 rna ? GO:0003674 ... P40007 29245012
    64 6elz:w (3.3) BS01 rna 2.1.1.167 GO:0000451 ... P25582 29245012
    65 6elz:y (3.3) BS01 rna ? GO:0000054 ... Q12522 29245012
    66 6elz:z (3.3) BS01 rna ? GO:0003674 ... P38202 29245012
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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