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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6dzp:C (3.42) BS01 rna ? GO:0002181 ... A0QSD4 30038002
    2 6dzp:D (3.42) BS01 rna ? GO:0003735 ... A0QSD1 30038002
    3 6dzp:E (3.42) BS01 rna ? GO:0003735 ... A0QSD2 30038002
    4 6dzp:F (3.42) BS01 rna ? GO:0000049 ... A0QSG1 30038002
    5 6dzp:F (3.42) BS02 rna ? GO:0000049 ... A0QSG1 30038002
    6 6dzp:G (3.42) BS01 rna ? GO:0002181 ... A0QSG4 30038002
    7 6dzp:H (3.42) BS01 rna ? GO:0003735 ... A0R7F6 30038002
    8 6dzp:I (3.42) BS01 rna ? GO:0003735 ... A0QS62 30038002
    9 6dzp:J (3.42) BS01 rna ? GO:0003735 ... A0QS45 30038002
    10 6dzp:K (3.42) BS01 rna ? GO:0003729 ... A0QSP8 30038002
    11 6dzp:L (3.42) BS01 rna ? GO:0003735 ... A0QSF9 30038002
    12 6dzp:M (3.42) BS01 rna ? GO:0003735 ... A0QSG8 30038002
    13 6dzp:N (3.42) BS01 rna ? GO:0000049 ... A0QSD8 30038002
    14 6dzp:O (3.42) BS01 rna ? GO:0003735 ... A0QSL9 30038002
    15 6dzp:P (3.42) BS01 rna ? GO:0003735 ... I7FGD9 30038002
    16 6dzp:P (3.42) BS02 rna ? GO:0003735 ... I7FGD9 30038002
    17 6dzp:Q (3.42) BS01 rna ? GO:0003735 ... A0QV42 30038002
    18 6dzp:R (3.42) BS01 rna ? GO:0000027 ... A0QYU6 30038002
    19 6dzp:S (3.42) BS01 rna ? GO:0003723 ... A0R151 30038002
    20 6dzp:T (3.42) BS01 rna ? GO:0003735 ... A0QSD6 30038002
    21 6dzp:U (3.42) BS01 rna ? GO:0000027 ... A0QSD3 30038002
    22 6dzp:V (3.42) BS01 rna ? GO:0003723 ... A0QSG0 30038002
    23 6dzp:W (3.42) BS01 rna ? GO:0003723 ... A0R3D2 30038002
    24 6dzp:W (3.42) BS02 rna ? GO:0003723 ... A0R3D2 30038002
    25 6dzp:X (3.42) BS01 rna ? GO:0003735 ... A0R150 30038002
    26 6dzp:X (3.42) BS02 rna ? GO:0003735 ... A0R150 30038002
    27 6dzp:Z (3.42) BS01 rna ? GO:0003735 ... A0QSD9 30038002
    28 6dzp:a (3.42) BS01 rna ? GO:0003735 ... A0QSG7 30038002
    29 6dzp:b (3.42) BS01 rna ? GO:0003735 ... A0R3I9 30038002
    30 6dzp:c (3.42) BS01 rna ? GO:0003735 ... A0R551 30038002
    31 6dzp:d (3.42) BS01 rna ? GO:0003735 ... A0R7K0 30038002
    32 6dzp:e (3.42) BS01 rna ? GO:0003735 ... A0QYU7 30038002
    33 6dzp:f (3.42) BS01 rna ? GO:0003735 ... A0QSL4 30038002
    34 6dzp:g (3.42) BS01 rna ? GO:0003735 ... A0R554 30038002
    35 6dzp:y (3.42) BS01 rna ? GO:0003735 ... A0R552 30038002
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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