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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 269 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6cfj:10 (2.8) BS01 rna ? GO:0003735 ... P60493 29410130
    2 6cfj:10 (2.8) BS02 rna ? GO:0003735 ... P60493 29410130
    3 6cfj:10 (2.8) BS03 MG ? GO:0003735 ... P60493 29410130
    4 6cfj:11 (2.8) BS01 rna ? GO:0003735 ... P60494 29410130
    5 6cfj:11 (2.8) BS02 MG ? GO:0003735 ... P60494 29410130
    6 6cfj:12 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 29410130
    7 6cfj:12 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 29410130
    8 6cfj:13 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 29410130
    9 6cfj:13 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 29410130
    10 6cfj:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 29410130
    11 6cfj:14 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 29410130
    12 6cfj:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    13 6cfj:15 (2.8) BS01 rna ? GO:0003735 ... P80339 29410130
    14 6cfj:15 (2.8) BS02 MG ? GO:0003735 ... P80339 29410130
    15 6cfj:15 (2.8) BS03 MG ? GO:0003735 ... P80339 29410130
    16 6cfj:15 (2.8) BS04 ZN ? GO:0003735 ... P80339 29410130
    17 6cfj:15 (2.8) BS05 MG ? GO:0003735 ... P80339 29410130
    18 6cfj:16 (2.8) BS01 rna ? GO:0000049 ... P35871 29410130
    19 6cfj:16 (2.8) BS02 MG ? GO:0000049 ... P35871 29410130
    20 6cfj:16 (2.8) BS03 ZN ? GO:0000049 ... P35871 29410130
    21 6cfj:16 (2.8) BS04 MG ? GO:0000049 ... P35871 29410130
    22 6cfj:17 (2.8) BS01 rna ? GO:0003735 ... P80340 29410130
    23 6cfj:17 (2.8) BS02 MG ? GO:0003735 ... P80340 29410130
    24 6cfj:17 (2.8) BS03 MG ? GO:0003735 ... P80340 29410130
    25 6cfj:18 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 29410130
    26 6cfj:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 29410130
    27 6cfj:18 (2.8) BS03 MG ? GO:0003735 ... Q5SKU1 29410130
    28 6cfj:18 (2.8) BS04 MG ? GO:0003735 ... Q5SKU1 29410130
    29 6cfj:18 (2.8) BS05 MG ? GO:0003735 ... Q5SKU1 29410130
    30 6cfj:19 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 29410130
    31 6cfj:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    32 6cfj:1D (2.8) BS01 rna ? GO:0002181 ... P60405 29410130
    33 6cfj:1D (2.8) BS02 rna ? GO:0002181 ... P60405 29410130
    34 6cfj:1D (2.8) BS03 MG ? GO:0002181 ... P60405 29410130
    35 6cfj:1D (2.8) BS04 MG ? GO:0002181 ... P60405 29410130
    36 6cfj:1D (2.8) BS05 MG ? GO:0002181 ... P60405 29410130
    37 6cfj:1D (2.8) BS06 MG ? GO:0002181 ... P60405 29410130
    38 6cfj:1D (2.8) BS07 MG ? GO:0002181 ... P60405 29410130
    39 6cfj:1D (2.8) BS08 MG ? GO:0002181 ... P60405 29410130
    40 6cfj:1D (2.8) BS09 MG ? GO:0002181 ... P60405 29410130
    41 6cfj:1D (2.8) BS10 MG ? GO:0002181 ... P60405 29410130
    42 6cfj:1D (2.8) BS11 MG ? GO:0002181 ... P60405 29410130
    43 6cfj:1D (2.8) BS12 MG ? GO:0002181 ... P60405 29410130
    44 6cfj:1D (2.8) BS13 MG ? GO:0002181 ... P60405 29410130
    45 6cfj:1D (2.8) BS14 MG ? GO:0002181 ... P60405 29410130
    46 6cfj:1D (2.8) BS15 MG ? GO:0002181 ... P60405 29410130
    47 6cfj:1E (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 29410130
    48 6cfj:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 29410130
    49 6cfj:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 29410130
    50 6cfj:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 29410130
    51 6cfj:1F (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 29410130
    52 6cfj:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    53 6cfj:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    54 6cfj:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    55 6cfj:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 29410130
    56 6cfj:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 29410130
    57 6cfj:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 29410130
    58 6cfj:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 29410130
    59 6cfj:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 29410130
    60 6cfj:1F (2.8) BS10 MG ? GO:0003735 ... Q5SHN9 29410130
    61 6cfj:1F (2.8) BS11 MG ? GO:0003735 ... Q5SHN9 29410130
    62 6cfj:1F (2.8) BS12 MG ? GO:0003735 ... Q5SHN9 29410130
    63 6cfj:1F (2.8) BS13 MG ? GO:0003735 ... Q5SHN9 29410130
    64 6cfj:1G (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 29410130
    65 6cfj:1G (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 29410130
    66 6cfj:1G (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 29410130
    67 6cfj:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 29410130
    68 6cfj:1H (2.8) BS01 rna ? GO:0002181 ... P0DOY8 29410130
    69 6cfj:1I (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 29410130
    70 6cfj:1I (2.8) BS02 MG ? GO:0003735 ... Q5SLQ1 29410130
    71 6cfj:1N (2.8) BS01 rna ? GO:0003729 ... P60488 29410130
    72 6cfj:1N (2.8) BS02 MG ? GO:0003729 ... P60488 29410130
    73 6cfj:1N (2.8) BS03 MG ? GO:0003729 ... P60488 29410130
    74 6cfj:1N (2.8) BS04 MG ? GO:0003729 ... P60488 29410130
    75 6cfj:1O (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 29410130
    76 6cfj:1O (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 29410130
    77 6cfj:1O (2.8) BS03 MG ? GO:0003735 ... Q5SHP8 29410130
    78 6cfj:1O (2.8) BS04 MG ? GO:0003735 ... Q5SHP8 29410130
    79 6cfj:1P (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 29410130
    80 6cfj:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 29410130
    81 6cfj:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 29410130
    82 6cfj:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 29410130
    83 6cfj:1Q (2.8) BS01 rna ? GO:0000049 ... P60489 29410130
    84 6cfj:1Q (2.8) BS02 rna ? GO:0000049 ... P60489 29410130
    85 6cfj:1Q (2.8) BS03 rna ? GO:0000049 ... P60489 29410130
    86 6cfj:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 29410130
    87 6cfj:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 29410130
    88 6cfj:1Q (2.8) BS06 MG ? GO:0000049 ... P60489 29410130
    89 6cfj:1Q (2.8) BS07 MG ? GO:0000049 ... P60489 29410130
    90 6cfj:1Q (2.8) BS08 MG ? GO:0000049 ... P60489 29410130
    91 6cfj:1R (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 29410130
    92 6cfj:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 29410130
    93 6cfj:1S (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 29410130
    94 6cfj:1S (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 29410130
    95 6cfj:1S (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 29410130
    96 6cfj:1S (2.8) BS04 MG ? GO:0003735 ... Q5SHQ4 29410130
    97 6cfj:1T (2.8) BS01 rna ? GO:0003735 ... P60490 29410130
    98 6cfj:1T (2.8) BS02 rna ? GO:0003735 ... P60490 29410130
    99 6cfj:1T (2.8) BS03 MG ? GO:0003735 ... P60490 29410130
    100 6cfj:1U (2.8) BS01 rna ? GO:0000027 ... P60491 29410130
    101 6cfj:1U (2.8) BS02 MG ? GO:0000027 ... P60491 29410130
    102 6cfj:1U (2.8) BS03 MG ? GO:0000027 ... P60491 29410130
    103 6cfj:1U (2.8) BS04 MG ? GO:0000027 ... P60491 29410130
    104 6cfj:1U (2.8) BS05 MG ? GO:0000027 ... P60491 29410130
    105 6cfj:1U (2.8) BS06 MG ? GO:0000027 ... P60491 29410130
    106 6cfj:1U (2.8) BS07 MG ? GO:0000027 ... P60491 29410130
    107 6cfj:1U (2.8) BS08 MG ? GO:0000027 ... P60491 29410130
    108 6cfj:1V (2.8) BS01 rna ? GO:0003723 ... P60492 29410130
    109 6cfj:1V (2.8) BS02 MG ? GO:0003723 ... P60492 29410130
    110 6cfj:1V (2.8) BS03 MG ? GO:0003723 ... P60492 29410130
    111 6cfj:1V (2.8) BS04 MG ? GO:0003723 ... P60492 29410130
    112 6cfj:1V (2.8) BS05 MG ? GO:0003723 ... P60492 29410130
    113 6cfj:1V (2.8) BS06 MG ? GO:0003723 ... P60492 29410130
    114 6cfj:1W (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 29410130
    115 6cfj:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    116 6cfj:1W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 29410130
    117 6cfj:1W (2.8) BS04 MG ? GO:0003735 ... Q5SHP3 29410130
    118 6cfj:1W (2.8) BS05 MG ? GO:0003735 ... Q5SHP3 29410130
    119 6cfj:1X (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 29410130
    120 6cfj:1X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 29410130
    121 6cfj:1X (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 29410130
    122 6cfj:1Y (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 29410130
    123 6cfj:1Y (2.8) BS02 MG ? GO:0003723 ... Q5SHP9 29410130
    124 6cfj:1Y (2.8) BS03 ZN ? GO:0003723 ... Q5SHP9 29410130
    125 6cfj:1Y (2.8) BS04 MG ? GO:0003723 ... Q5SHP9 29410130
    126 6cfj:1Z (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 29410130
    127 6cfj:1b (2.8) BS01 rna ? GO:0003735 ... P80371 29410130
    128 6cfj:1b (2.8) BS02 MG ? GO:0003735 ... P80371 29410130
    129 6cfj:1c (2.8) BS01 rna ? GO:0003676 ... P80372 29410130
    130 6cfj:1d (2.8) BS01 rna ? GO:0003723 ... P80373 29410130
    131 6cfj:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 29410130
    132 6cfj:1e (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 29410130
    133 6cfj:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 29410130
    134 6cfj:1e (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 29410130
    135 6cfj:1f (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 29410130
    136 6cfj:1f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 29410130
    137 6cfj:1g (2.8) BS01 rna ? GO:0000028 ... P17291 29410130
    138 6cfj:1g (2.8) BS02 rna ? GO:0000028 ... P17291 29410130
    139 6cfj:1h (2.8) BS01 rna ? GO:0003735 ... P0DOY9 29410130
    140 6cfj:1i (2.8) BS01 rna ? GO:0000049 ... P80374 29410130
    141 6cfj:1i (2.8) BS02 rna ? GO:0000049 ... P80374 29410130
    142 6cfj:1j (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 29410130
    143 6cfj:1k (2.8) BS01 rna ? GO:0003735 ... P80376 29410130
    144 6cfj:1k (2.8) BS02 MG ? GO:0003735 ... P80376 29410130
    145 6cfj:1l (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 29410130
    146 6cfj:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 29410130
    147 6cfj:1m (2.8) BS01 rna ? GO:0000049 ... P80377 29410130
    148 6cfj:1m (2.8) BS02 rna ? GO:0000049 ... P80377 29410130
    149 6cfj:1m (2.8) BS03 rna ? GO:0000049 ... P80377 29410130
    150 6cfj:1m (2.8) BS04 MG ? GO:0000049 ... P80377 29410130
    151 6cfj:1n (2.8) BS01 rna ? GO:0003735 ... P0DOY6 29410130
    152 6cfj:1n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    153 6cfj:1n (2.8) BS03 MG ? GO:0003735 ... P0DOY6 29410130
    154 6cfj:1o (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 29410130
    155 6cfj:1o (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 29410130
    156 6cfj:1p (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 29410130
    157 6cfj:1q (2.8) BS01 rna ? GO:0003735 ... P0DOY7 29410130
    158 6cfj:1r (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 29410130
    159 6cfj:1s (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 29410130
    160 6cfj:1t (2.8) BS01 rna ? GO:0003723 ... P80380 29410130
    161 6cfj:1t (2.8) BS02 MG ? GO:0003723 ... P80380 29410130
    162 6cfj:20 (2.8) BS01 rna ? GO:0003735 ... P60493 29410130
    163 6cfj:20 (2.8) BS02 rna ? GO:0003735 ... P60493 29410130
    164 6cfj:20 (2.8) BS03 rna ? GO:0003735 ... P60493 29410130
    165 6cfj:20 (2.8) BS04 MG ? GO:0003735 ... P60493 29410130
    166 6cfj:21 (2.8) BS01 rna ? GO:0003735 ... P60494 29410130
    167 6cfj:21 (2.8) BS02 rna ? GO:0003735 ... P60494 29410130
    168 6cfj:21 (2.8) BS03 MG ? GO:0003735 ... P60494 29410130
    169 6cfj:22 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 29410130
    170 6cfj:23 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 29410130
    171 6cfj:23 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 29410130
    172 6cfj:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 29410130
    173 6cfj:24 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 29410130
    174 6cfj:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    175 6cfj:25 (2.8) BS01 rna ? GO:0003735 ... P80339 29410130
    176 6cfj:25 (2.8) BS02 ZN ? GO:0003735 ... P80339 29410130
    177 6cfj:25 (2.8) BS03 MG ? GO:0003735 ... P80339 29410130
    178 6cfj:26 (2.8) BS01 rna ? GO:0000049 ... P35871 29410130
    179 6cfj:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 29410130
    180 6cfj:27 (2.8) BS01 rna ? GO:0003735 ... P80340 29410130
    181 6cfj:27 (2.8) BS02 MG ? GO:0003735 ... P80340 29410130
    182 6cfj:28 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 29410130
    183 6cfj:29 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 29410130
    184 6cfj:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    185 6cfj:2D (2.8) BS01 rna ? GO:0002181 ... P60405 29410130
    186 6cfj:2D (2.8) BS02 rna ? GO:0002181 ... P60405 29410130
    187 6cfj:2D (2.8) BS03 MG ? GO:0002181 ... P60405 29410130
    188 6cfj:2D (2.8) BS04 MG ? GO:0002181 ... P60405 29410130
    189 6cfj:2D (2.8) BS05 MG ? GO:0002181 ... P60405 29410130
    190 6cfj:2D (2.8) BS06 MG ? GO:0002181 ... P60405 29410130
    191 6cfj:2D (2.8) BS07 MG ? GO:0002181 ... P60405 29410130
    192 6cfj:2E (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 29410130
    193 6cfj:2F (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 29410130
    194 6cfj:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    195 6cfj:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    196 6cfj:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    197 6cfj:2G (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 29410130
    198 6cfj:2G (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 29410130
    199 6cfj:2G (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 29410130
    200 6cfj:2G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 29410130
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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