Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 154 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6bz6:QB (3.18) BS01 rna ? GO:0003735 ... P80371 30476222
    2 6bz6:QC (3.18) BS01 rna ? GO:0003676 ... P80372 30476222
    3 6bz6:QC (3.18) BS02 MG ? GO:0003676 ... P80372 30476222
    4 6bz6:QD (3.18) BS01 rna ? GO:0003723 ... P80373 30476222
    5 6bz6:QD (3.18) BS02 SF4 ? GO:0003723 ... P80373 30476222
    6 6bz6:QE (3.18) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    7 6bz6:QF (3.18) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    8 6bz6:QG (3.18) BS01 rna ? GO:0000028 ... P17291 30476222
    9 6bz6:QH (3.18) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    10 6bz6:QI (3.18) BS01 rna ? GO:0000049 ... P80374 30476222
    11 6bz6:QI (3.18) BS02 rna ? GO:0000049 ... P80374 30476222
    12 6bz6:QJ (3.18) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    13 6bz6:QJ (3.18) BS02 MG ? GO:0000049 ... Q5SHN7 30476222
    14 6bz6:QK (3.18) BS01 rna ? GO:0003735 ... P80376 30476222
    15 6bz6:QL (3.18) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    16 6bz6:QM (3.18) BS01 rna ? GO:0000049 ... P80377 30476222
    17 6bz6:QM (3.18) BS02 MG ? GO:0000049 ... P80377 30476222
    18 6bz6:QN (3.18) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    19 6bz6:QN (3.18) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    20 6bz6:QO (3.18) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    21 6bz6:QO (3.18) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    22 6bz6:QP (3.18) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    23 6bz6:QQ (3.18) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    24 6bz6:QR (3.18) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    25 6bz6:QS (3.18) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    26 6bz6:QT (3.18) BS01 rna ? GO:0003723 ... P80380 30476222
    27 6bz6:R0 (3.18) BS01 rna ? GO:0003735 ... P60493 30476222
    28 6bz6:R0 (3.18) BS02 rna ? GO:0003735 ... P60493 30476222
    29 6bz6:R0 (3.18) BS03 rna ? GO:0003735 ... P60493 30476222
    30 6bz6:R1 (3.18) BS01 rna ? GO:0003735 ... P60494 30476222
    31 6bz6:R2 (3.18) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    32 6bz6:R3 (3.18) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    33 6bz6:R3 (3.18) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    34 6bz6:R4 (3.18) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    35 6bz6:R4 (3.18) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    36 6bz6:R5 (3.18) BS01 rna ? GO:0003735 ... P80339 30476222
    37 6bz6:R5 (3.18) BS02 ZN ? GO:0003735 ... P80339 30476222
    38 6bz6:R6 (3.18) BS01 rna ? GO:0000049 ... P35871 30476222
    39 6bz6:R6 (3.18) BS02 ZN ? GO:0000049 ... P35871 30476222
    40 6bz6:R7 (3.18) BS01 rna ? GO:0003735 ... P80340 30476222
    41 6bz6:R8 (3.18) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    42 6bz6:R9 (3.18) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    43 6bz6:R9 (3.18) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    44 6bz6:RD (3.18) BS01 rna ? GO:0002181 ... P60405 30476222
    45 6bz6:RD (3.18) BS02 rna ? GO:0002181 ... P60405 30476222
    46 6bz6:RE (3.18) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    47 6bz6:RE (3.18) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    48 6bz6:RE (3.18) BS03 MG ? GO:0003735 ... Q5SHN8 30476222
    49 6bz6:RF (3.18) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    50 6bz6:RG (3.18) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    51 6bz6:RG (3.18) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    52 6bz6:RG (3.18) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    53 6bz6:RH (3.18) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    54 6bz6:RI (3.18) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    55 6bz6:RN (3.18) BS01 rna ? GO:0003729 ... P60488 30476222
    56 6bz6:RO (3.18) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    57 6bz6:RO (3.18) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    58 6bz6:RP (3.18) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    59 6bz6:RP (3.18) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    60 6bz6:RQ (3.18) BS01 rna ? GO:0000049 ... P60489 30476222
    61 6bz6:RQ (3.18) BS02 rna ? GO:0000049 ... P60489 30476222
    62 6bz6:RQ (3.18) BS03 MG ? GO:0000049 ... P60489 30476222
    63 6bz6:RR (3.18) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    64 6bz6:RS (3.18) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    65 6bz6:RS (3.18) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    66 6bz6:RT (3.18) BS01 rna ? GO:0003735 ... P60490 30476222
    67 6bz6:RT (3.18) BS02 rna ? GO:0003735 ... P60490 30476222
    68 6bz6:RU (3.18) BS01 rna ? GO:0000027 ... P60491 30476222
    69 6bz6:RU (3.18) BS02 MG ? GO:0000027 ... P60491 30476222
    70 6bz6:RV (3.18) BS01 rna ? GO:0003723 ... P60492 30476222
    71 6bz6:RW (3.18) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    72 6bz6:RX (3.18) BS01 rna ? GO:0000027 ... Q5SHP0 30476222
    73 6bz6:RY (3.18) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    74 6bz6:RY (3.18) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    75 6bz6:RZ (3.18) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    76 6bz6:XB (3.18) BS01 rna ? GO:0003735 ... P80371 30476222
    77 6bz6:XC (3.18) BS01 rna ? GO:0003676 ... P80372 30476222
    78 6bz6:XD (3.18) BS01 rna ? GO:0003723 ... P80373 30476222
    79 6bz6:XD (3.18) BS02 SF4 ? GO:0003723 ... P80373 30476222
    80 6bz6:XE (3.18) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    81 6bz6:XE (3.18) BS02 MG ? GO:0003723 ... Q5SHQ5 30476222
    82 6bz6:XF (3.18) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    83 6bz6:XG (3.18) BS01 rna ? GO:0000028 ... P17291 30476222
    84 6bz6:XH (3.18) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    85 6bz6:XI (3.18) BS01 rna ? GO:0000049 ... P80374 30476222
    86 6bz6:XJ (3.18) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    87 6bz6:XK (3.18) BS01 rna ? GO:0003735 ... P80376 30476222
    88 6bz6:XK (3.18) BS02 MG ? GO:0003735 ... P80376 30476222
    89 6bz6:XL (3.18) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    90 6bz6:XM (3.18) BS01 rna ? GO:0000049 ... P80377 30476222
    91 6bz6:XM (3.18) BS02 MG ? GO:0000049 ... P80377 30476222
    92 6bz6:XM (3.18) BS03 MG ? GO:0000049 ... P80377 30476222
    93 6bz6:XM (3.18) BS04 MG ? GO:0000049 ... P80377 30476222
    94 6bz6:XN (3.18) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    95 6bz6:XN (3.18) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    96 6bz6:XO (3.18) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    97 6bz6:XO (3.18) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    98 6bz6:XP (3.18) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    99 6bz6:XQ (3.18) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    100 6bz6:XQ (3.18) BS02 MG ? GO:0003735 ... P0DOY7 30476222
    101 6bz6:XR (3.18) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    102 6bz6:XS (3.18) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    103 6bz6:XT (3.18) BS01 rna ? GO:0003723 ... P80380 30476222
    104 6bz6:Y0 (3.18) BS01 rna ? GO:0003735 ... P60493 30476222
    105 6bz6:Y0 (3.18) BS02 rna ? GO:0003735 ... P60493 30476222
    106 6bz6:Y1 (3.18) BS01 rna ? GO:0003735 ... P60494 30476222
    107 6bz6:Y2 (3.18) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    108 6bz6:Y3 (3.18) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    109 6bz6:Y3 (3.18) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    110 6bz6:Y4 (3.18) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    111 6bz6:Y4 (3.18) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    112 6bz6:Y5 (3.18) BS01 rna ? GO:0003735 ... P80339 30476222
    113 6bz6:Y5 (3.18) BS02 ZN ? GO:0003735 ... P80339 30476222
    114 6bz6:Y6 (3.18) BS01 rna ? GO:0000049 ... P35871 30476222
    115 6bz6:Y6 (3.18) BS02 ZN ? GO:0000049 ... P35871 30476222
    116 6bz6:Y7 (3.18) BS01 rna ? GO:0003735 ... P80340 30476222
    117 6bz6:Y8 (3.18) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    118 6bz6:Y9 (3.18) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    119 6bz6:Y9 (3.18) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    120 6bz6:YD (3.18) BS01 rna ? GO:0002181 ... P60405 30476222
    121 6bz6:YD (3.18) BS02 rna ? GO:0002181 ... P60405 30476222
    122 6bz6:YD (3.18) BS03 MG ? GO:0002181 ... P60405 30476222
    123 6bz6:YE (3.18) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    124 6bz6:YE (3.18) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    125 6bz6:YF (3.18) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    126 6bz6:YG (3.18) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    127 6bz6:YG (3.18) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    128 6bz6:YG (3.18) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    129 6bz6:YH (3.18) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    130 6bz6:YI (3.18) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    131 6bz6:YI (3.18) BS02 rna ? GO:0003735 ... Q5SLQ1 30476222
    132 6bz6:YN (3.18) BS01 rna ? GO:0003729 ... P60488 30476222
    133 6bz6:YO (3.18) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    134 6bz6:YO (3.18) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    135 6bz6:YP (3.18) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    136 6bz6:YP (3.18) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    137 6bz6:YQ (3.18) BS01 rna ? GO:0000049 ... P60489 30476222
    138 6bz6:YQ (3.18) BS02 rna ? GO:0000049 ... P60489 30476222
    139 6bz6:YQ (3.18) BS03 MG ? GO:0000049 ... P60489 30476222
    140 6bz6:YR (3.18) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    141 6bz6:YS (3.18) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    142 6bz6:YS (3.18) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    143 6bz6:YT (3.18) BS01 rna ? GO:0003735 ... P60490 30476222
    144 6bz6:YT (3.18) BS02 rna ? GO:0003735 ... P60490 30476222
    145 6bz6:YU (3.18) BS01 rna ? GO:0000027 ... P60491 30476222
    146 6bz6:YV (3.18) BS01 rna ? GO:0003723 ... P60492 30476222
    147 6bz6:YW (3.18) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    148 6bz6:YX (3.18) BS01 rna ? GO:0000027 ... Q5SHP0 30476222
    149 6bz6:YX (3.18) BS02 MG ? GO:0000027 ... Q5SHP0 30476222
    150 6bz6:YY (3.18) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    151 6bz6:YY (3.18) BS02 MG ? GO:0003723 ... Q5SHP9 30476222
    152 6bz6:YY (3.18) BS03 ZN ? GO:0003723 ... Q5SHP9 30476222
    153 6bz6:YZ (3.18) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    154 6bz6:YZ (3.18) BS02 rna ? GO:0003723 ... Q5SHZ1 30476222
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218