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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6az1:A (2.7) BS01 rna ? GO:0003735 ... E9BRS2 29150609
    2 6az1:B (2.7) BS01 rna ? GO:0000028 ... A4IDS4 29150609
    3 6az1:C (2.7) BS01 rna ? GO:0003723 ... E9BQ25 29150609
    4 6az1:D (2.7) BS01 rna ? GO:0003723 ... A0A3S5H5Z2 29150609
    5 6az1:E (2.7) BS01 rna ? GO:0003723 ... A0A3Q8I8K3 29150609
    6 6az1:F (2.7) BS01 rna ? GO:0003723 ... A0A3S7X558 29150609
    7 6az1:G (2.7) BS01 rna ? GO:0003735 ... O44012 29150609
    8 6az1:H (2.7) BS01 rna ? GO:0000028 ... A0A381MCG8 29150609
    9 6az1:H (2.7) BS02 rna ? GO:0000028 ... A0A381MCG8 29150609
    10 6az1:I (2.7) BS01 rna ? GO:0003735 ... A0A3S7WNJ7 29150609
    11 6az1:J (2.7) BS01 rna ? GO:0003735 ... E9BAV6 29150609
    12 6az1:K (2.7) BS01 rna ? GO:0000462 ... A0A3Q8ID68 29150609
    13 6az1:L (2.7) BS01 rna ? GO:0000462 ... E9BI96 29150609
    14 6az1:M (2.7) BS01 rna ? GO:0003735 ... E9BJI2 29150609
    15 6az1:N (2.7) BS01 rna ? GO:0003723 ... E9BTG4 29150609
    16 6az1:O (2.7) BS01 rna ? GO:0000028 ... A0A3S7X3Z7 29150609
    17 6az1:P (2.7) BS01 rna ? GO:0003735 ... E9BFB6 29150609
    18 6az1:Q (2.7) BS01 rna ? GO:0003735 ... A0A3S5H6N5 29150609
    19 6az1:R (2.7) BS01 rna ? GO:0003676 ... E9BTF9 29150609
    20 6az1:S (2.7) BS01 rna ? GO:0003735 ... E9BJV7 29150609
    21 6az1:T (2.7) BS01 rna ? GO:0003735 ... A0A3S7X790 29150609
    22 6az1:U (2.7) BS01 rna ? GO:0003735 ... Q9TXA6 29150609
    23 6az1:V (2.7) BS01 rna ? GO:0003735 ... E9BJZ5 29150609
    24 6az1:W (2.7) BS01 rna ? GO:0000028 ... E9BFQ0 29150609
    25 6az1:X (2.7) BS01 rna ? GO:0000028 ... E9BR60 29150609
    26 6az1:Y (2.7) BS01 rna ? GO:0003735 ... E9BAR6 29150609
    27 6az1:Z (2.7) BS01 rna ? GO:0003735 ... A0A3Q8IKW0 29150609
    28 6az1:a (2.7) BS01 rna ? GO:0003735 ... E9BHM6 29150609
    29 6az1:b (2.7) BS01 rna ? GO:0003729 ... E9BK95 29150609
    30 6az1:c (2.7) BS01 rna ? GO:0000028 ... A0A3Q8ID11 29150609
    31 6az1:d (2.7) BS01 rna ? GO:0000028 ... E9BIH3 29150609
    32 6az1:e (2.7) BS01 rna ? GO:0003735 ... E9BLG3 29150609
    33 6az1:e (2.7) BS02 rna ? GO:0003735 ... E9BLG3 29150609
    34 6az1:f (2.7) BS01 rna ? GO:0003735 ... A0A3S7XAC2 29150609
    35 6az1:g (2.7) BS01 rna ? GO:0001934 ... Q9BIJ5 29150609
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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