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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6awc:04 (7.9) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 29027901
    2 6awc:E (7.9) BS01 rna ? GO:0000028 ... P0A7V0 29027901
    3 6awc:F (7.9) BS01 rna ? GO:0003676 ... P0A7V3 29027901
    4 6awc:G (7.9) BS01 rna ? GO:0000028 ... P0A7V8 29027901
    5 6awc:H (7.9) BS01 rna ? GO:0000028 ... P0A7W1 29027901
    6 6awc:I (7.9) BS01 rna ? GO:0003735 ... P02358 29027901
    7 6awc:J (7.9) BS01 rna ? GO:0003723 ... P02359 29027901
    8 6awc:K (7.9) BS01 rna ? GO:0000028 ... P0A7W7 29027901
    9 6awc:L (7.9) BS01 rna ? GO:0000049 ... P0A7X3 29027901
    10 6awc:M (7.9) BS01 rna ? GO:0000049 ... P0A7R5 29027901
    11 6awc:N (7.9) BS01 rna ? GO:0002181 ... P0A7R9 29027901
    12 6awc:O (7.9) BS01 rna ? GO:0000049 ... P0A7S3 29027901
    13 6awc:P (7.9) BS01 rna ? GO:0000049 ... P0A7S9 29027901
    14 6awc:Q (7.9) BS01 rna ? GO:0000028 ... P0AG59 29027901
    15 6awc:R (7.9) BS01 rna ? GO:0000028 ... P0ADZ4 29027901
    16 6awc:S (7.9) BS01 rna ? GO:0000028 ... P0A7T3 29027901
    17 6awc:T (7.9) BS01 rna ? GO:0000028 ... P0AG63 29027901
    18 6awc:U (7.9) BS01 rna ? GO:0003735 ... P0A7T7 29027901
    19 6awc:V (7.9) BS01 rna ? GO:0003723 ... P0A7U3 29027901
    20 6awc:W (7.9) BS01 rna ? GO:0000028 ... P0A7U7 29027901
    21 6awc:X (7.9) BS01 rna ? GO:0000028 ... P68679 29027901
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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