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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6a5l:A (5.6) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    2 6a5l:A (5.6) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    3 6a5l:A (5.6) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    4 6a5l:A (5.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    5 6a5l:A (5.6) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    6 6a5l:A (5.6) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    7 6a5l:B (5.6) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    8 6a5l:B (5.6) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    9 6a5l:B (5.6) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    10 6a5l:B (5.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    11 6a5l:C (5.6) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    12 6a5l:I (5.6) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    13 6a5l:I (5.6) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    14 6a5l:J (5.6) BS01 ZN ? GO:0000428 ... C4R009 30287617
    15 6a5l:a (5.6) BS01 dna ? GO:0000775 ... P84243 30287617
    16 6a5l:a (5.6) BS02 dna ? GO:0000775 ... P84243 30287617
    17 6a5l:b (5.6) BS01 dna ? GO:0000781 ... P62805 30287617
    18 6a5l:b (5.6) BS02 dna ? GO:0000781 ... P62805 30287617
    19 6a5l:c (5.6) BS01 dna ? GO:0000786 ... P04908 30287617
    20 6a5l:c (5.6) BS02 dna ? GO:0000786 ... P04908 30287617
    21 6a5l:d (5.6) BS01 dna ? GO:0000786 ... P06899 30287617
    22 6a5l:d (5.6) BS02 dna ? GO:0000786 ... P06899 30287617
    23 6a5l:e (5.6) BS01 dna ? GO:0000775 ... P84243 30287617
    24 6a5l:e (5.6) BS02 dna ? GO:0000775 ... P84243 30287617
    25 6a5l:f (5.6) BS01 dna ? GO:0000781 ... P62805 30287617
    26 6a5l:f (5.6) BS02 dna ? GO:0000781 ... P62805 30287617
    27 6a5l:g (5.6) BS01 dna ? GO:0000786 ... P04908 30287617
    28 6a5l:g (5.6) BS02 dna ? GO:0000786 ... P04908 30287617
    29 6a5l:h (5.6) BS01 dna ? GO:0000786 ... P06899 30287617
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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