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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5zet:1 (3.2) BS01 rna ? GO:0003735 ... A0QSG7 30206241
    2 5zet:1 (3.2) BS02 rna ? GO:0003735 ... A0QSG7 30206241
    3 5zet:2 (3.2) BS01 rna ? GO:0003735 ... A0R215 30206241
    4 5zet:3 (3.2) BS01 rna ? GO:0003735 ... A0R3I9 30206241
    5 5zet:4 (3.2) BS01 rna ? GO:0003735 ... A0QS39 30206241
    6 5zet:5 (3.2) BS01 rna ? GO:0003735 ... A0R7K0 30206241
    7 5zet:6 (3.2) BS01 rna ? GO:0003735 ... A0QYU7 30206241
    8 5zet:7 (3.2) BS01 rna ? GO:0003735 ... A0QSL4 30206241
    9 5zet:C (3.2) BS01 rna ? GO:0002181 ... A0QSD4 30206241
    10 5zet:D (3.2) BS01 rna ? GO:0003735 ... A0QSD1 30206241
    11 5zet:E (3.2) BS01 rna ? GO:0003735 ... A0QSD2 30206241
    12 5zet:F (3.2) BS01 rna ? GO:0000049 ... A0QSG1 30206241
    13 5zet:F (3.2) BS02 rna ? GO:0000049 ... A0QSG1 30206241
    14 5zet:G (3.2) BS01 rna ? GO:0002181 ... A0QSG4 30206241
    15 5zet:H (3.2) BS01 rna ? GO:0003735 ... A0R7F6 30206241
    16 5zet:I (3.2) BS01 rna ? GO:0003735 ... A0QS62 30206241
    17 5zet:J (3.2) BS01 rna ? GO:0003735 ... A0QS45 30206241
    18 5zet:K (3.2) BS01 rna ? GO:0003729 ... A0QSP8 30206241
    19 5zet:L (3.2) BS01 rna ? GO:0003735 ... A0QSF9 30206241
    20 5zet:M (3.2) BS01 rna ? GO:0003735 ... A0QSG8 30206241
    21 5zet:N (3.2) BS01 rna ? GO:0000049 ... A0QSD8 30206241
    22 5zet:O (3.2) BS01 rna ? GO:0003735 ... A0QSL9 30206241
    23 5zet:P (3.2) BS01 rna ? GO:0003735 ... A0QSG5 30206241
    24 5zet:P (3.2) BS02 rna ? GO:0003735 ... A0QSG5 30206241
    25 5zet:Q (3.2) BS01 rna ? GO:0003735 ... A0QV42 30206241
    26 5zet:R (3.2) BS01 rna ? GO:0000027 ... A0QYU6 30206241
    27 5zet:S (3.2) BS01 rna ? GO:0003723 ... A0R151 30206241
    28 5zet:T (3.2) BS01 rna ? GO:0003735 ... A0QSD6 30206241
    29 5zet:U (3.2) BS01 rna ? GO:0000027 ... A0QSD3 30206241
    30 5zet:V (3.2) BS01 rna ? GO:0003723 ... A0QSG0 30206241
    31 5zet:W (3.2) BS01 rna ? GO:0003723 ... A0R3D2 30206241
    32 5zet:X (3.2) BS01 rna ? GO:0003735 ... A0R150 30206241
    33 5zet:Y (3.2) BS01 rna ? GO:0003735 ... A0QV03 30206241
    34 5zet:Z (3.2) BS01 rna ? GO:0003735 ... A0QSD9 30206241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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