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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5z84:A (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    2 5z84:A (1.85) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    3 5z84:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    4 5z84:A (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    5 5z84:A (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    6 5z84:A (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    7 5z84:B (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 30077971
    8 5z84:B (1.85) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    9 5z84:C (1.85) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    10 5z84:C (1.85) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    11 5z84:C (1.85) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    12 5z84:F (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    13 5z84:J (1.85) BS01 DMU ? GO:0006123 ... P07470 30077971
    14 5z84:J (1.85) BS02 DMU ? GO:0006123 ... P07470 30077971
    15 5z84:L (1.85) BS01 DMU ? GO:0006123 ... P00430 30077971
    16 5z84:M (1.85) BS01 DMU ? GO:0006123 ... P10175 30077971
    17 5z84:N (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    18 5z84:N (1.85) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    19 5z84:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    20 5z84:N (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    21 5z84:N (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    22 5z84:N (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    23 5z84:O (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 30077971
    24 5z84:O (1.85) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    25 5z84:P (1.85) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    26 5z84:P (1.85) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    27 5z84:P (1.85) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    28 5z84:S (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    29 5z84:W (1.85) BS01 DMU ? GO:0006123 ... P07470 30077971
    30 5z84:Z (1.85) BS01 DMU ? GO:0006123 ... P10175 30077971
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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