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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5yls:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    2 5yls:A (3.0) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    3 5yls:A (3.0) BS03 Y50 3.6.5.- GO:0000226 ... Q2XVP4 29691282 PDBbind: -logKd/Ki=5.29, Kd=5.13uM
    4 5yls:B (3.0) BS01 GDP ? GO:0000226 ... P02554 29691282
    5 5yls:B (3.0) BS02 Y50 ? GO:0000226 ... P02554 29691282 PDBbind: -logKd/Ki=5.29, Kd=5.13uM
    6 5yls:C (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    7 5yls:C (3.0) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    8 5yls:C (3.0) BS03 Y50 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    9 5yls:D (3.0) BS01 GTP ? GO:0000226 ... P02554 29691282
    10 5yls:D (3.0) BS02 Y50 ? GO:0000226 ... P02554 29691282
    11 5yls:F (3.0) BS01 ACP N/A GO:0036211 ... N/A 29691282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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