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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2780 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5y6p:14 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2 5y6p:14 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    3 5y6p:14 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    4 5y6p:24 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    5 5y6p:24 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    6 5y6p:24 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    7 5y6p:24 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    8 5y6p:24 (3.5) BS05 PEB N/A GO:0015979 ... N/A 29045394
    9 5y6p:24 (3.5) BS06 PEB N/A GO:0015979 ... N/A 29045394
    10 5y6p:34 (3.5) BS01 PEB N/A N/A N/A 29045394
    11 5y6p:34 (3.5) BS02 PEB N/A N/A N/A 29045394
    12 5y6p:34 (3.5) BS03 PEB N/A N/A N/A 29045394
    13 5y6p:34 (3.5) BS04 PEB N/A N/A N/A 29045394
    14 5y6p:34 (3.5) BS05 PEB N/A N/A N/A 29045394
    15 5y6p:34 (3.5) BS06 PEB N/A N/A N/A 29045394
    16 5y6p:34 (3.5) BS07 PEB N/A N/A N/A 29045394
    17 5y6p:34 (3.5) BS08 PVN N/A N/A N/A 29045394
    18 5y6p:34 (3.5) BS09 PUB N/A N/A N/A 29045394
    19 5y6p:34 (3.5) BS10 PUB N/A N/A N/A 29045394
    20 5y6p:34 (3.5) BS11 PEB N/A N/A N/A 29045394
    21 5y6p:34 (3.5) BS12 PEB N/A N/A N/A 29045394
    22 5y6p:44 (3.5) BS01 PEB N/A N/A N/A 29045394
    23 5y6p:44 (3.5) BS02 PEB N/A N/A N/A 29045394
    24 5y6p:44 (3.5) BS03 PEB N/A N/A N/A 29045394
    25 5y6p:44 (3.5) BS04 PEB N/A N/A N/A 29045394
    26 5y6p:44 (3.5) BS05 PEB N/A N/A N/A 29045394
    27 5y6p:44 (3.5) BS06 PEB N/A N/A N/A 29045394
    28 5y6p:44 (3.5) BS07 PEB N/A N/A N/A 29045394
    29 5y6p:44 (3.5) BS08 PVN N/A N/A N/A 29045394
    30 5y6p:44 (3.5) BS09 PUB N/A N/A N/A 29045394
    31 5y6p:44 (3.5) BS10 PUB N/A N/A N/A 29045394
    32 5y6p:A1 (3.5) BS01 PEB N/A N/A N/A 29045394
    33 5y6p:A2 (3.5) BS01 PEB N/A N/A N/A 29045394
    34 5y6p:A2 (3.5) BS02 PEB N/A N/A N/A 29045394
    35 5y6p:A2 (3.5) BS03 PEB N/A N/A N/A 29045394
    36 5y6p:A2 (3.5) BS04 PVN N/A N/A N/A 29045394
    37 5y6p:A2 (3.5) BS05 PUB N/A N/A N/A 29045394
    38 5y6p:A2 (3.5) BS06 PUB N/A N/A N/A 29045394
    39 5y6p:A2 (3.5) BS07 PEB N/A N/A N/A 29045394
    40 5y6p:A2 (3.5) BS08 PEB N/A N/A N/A 29045394
    41 5y6p:A2 (3.5) BS09 PEB N/A N/A N/A 29045394
    42 5y6p:A2 (3.5) BS10 PEB N/A N/A N/A 29045394
    43 5y6p:A2 (3.5) BS11 PEB N/A N/A N/A 29045394
    44 5y6p:A2 (3.5) BS12 PEB N/A N/A N/A 29045394
    45 5y6p:A2 (3.5) BS13 PEB N/A N/A N/A 29045394
    46 5y6p:A3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    47 5y6p:A3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    48 5y6p:A4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    49 5y6p:A4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    50 5y6p:A4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    51 5y6p:A5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    52 5y6p:A5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    53 5y6p:A6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    54 5y6p:A6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    55 5y6p:A7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    56 5y6p:A8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    57 5y6p:A8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    58 5y6p:A8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    59 5y6p:A8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    60 5y6p:A9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    61 5y6p:A9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    62 5y6p:A9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    63 5y6p:B1 (3.5) BS01 PEB N/A N/A N/A 29045394
    64 5y6p:B2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    65 5y6p:B2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    66 5y6p:B2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    67 5y6p:B2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    68 5y6p:B3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    69 5y6p:B3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    70 5y6p:B3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    71 5y6p:B3 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    72 5y6p:B4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    73 5y6p:B4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    74 5y6p:B4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    75 5y6p:B4 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    76 5y6p:B5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    77 5y6p:B5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    78 5y6p:B5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    79 5y6p:B5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    80 5y6p:B6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    81 5y6p:B6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    82 5y6p:B6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    83 5y6p:B6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    84 5y6p:B7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    85 5y6p:B7 (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    86 5y6p:B7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    87 5y6p:B7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    88 5y6p:B8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    89 5y6p:B8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    90 5y6p:B8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    91 5y6p:B8 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    92 5y6p:B9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    93 5y6p:B9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    94 5y6p:B9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    95 5y6p:B9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    96 5y6p:C1 (3.5) BS01 PEB N/A N/A N/A 29045394
    97 5y6p:C2 (3.5) BS01 PEB N/A N/A N/A 29045394
    98 5y6p:C2 (3.5) BS02 PEB N/A N/A N/A 29045394
    99 5y6p:C2 (3.5) BS03 PEB N/A N/A N/A 29045394
    100 5y6p:C2 (3.5) BS04 PEB N/A N/A N/A 29045394
    101 5y6p:C2 (3.5) BS05 PEB N/A N/A N/A 29045394
    102 5y6p:C2 (3.5) BS06 PEB N/A N/A N/A 29045394
    103 5y6p:C2 (3.5) BS07 PEB N/A N/A N/A 29045394
    104 5y6p:C2 (3.5) BS08 PVN N/A N/A N/A 29045394
    105 5y6p:C2 (3.5) BS09 PUB N/A N/A N/A 29045394
    106 5y6p:C2 (3.5) BS10 PUB N/A N/A N/A 29045394
    107 5y6p:C2 (3.5) BS11 PEB N/A N/A N/A 29045394
    108 5y6p:C3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    109 5y6p:C3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    110 5y6p:C4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    111 5y6p:C4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    112 5y6p:C5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    113 5y6p:C5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    114 5y6p:C6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    115 5y6p:C6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    116 5y6p:C7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    117 5y6p:C7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    118 5y6p:C8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    119 5y6p:C8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    120 5y6p:C8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    121 5y6p:C8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    122 5y6p:C9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    123 5y6p:C9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    124 5y6p:D1 (3.5) BS01 PEB N/A N/A N/A 29045394
    125 5y6p:D2 (3.5) BS01 PEB N/A N/A N/A 29045394
    126 5y6p:D2 (3.5) BS02 PEB N/A N/A N/A 29045394
    127 5y6p:D2 (3.5) BS03 PEB N/A N/A N/A 29045394
    128 5y6p:D2 (3.5) BS04 PEB N/A N/A N/A 29045394
    129 5y6p:D2 (3.5) BS05 PEB N/A N/A N/A 29045394
    130 5y6p:D2 (3.5) BS06 PEB N/A N/A N/A 29045394
    131 5y6p:D2 (3.5) BS07 PEB N/A N/A N/A 29045394
    132 5y6p:D2 (3.5) BS08 PEB N/A N/A N/A 29045394
    133 5y6p:D2 (3.5) BS09 PVN N/A N/A N/A 29045394
    134 5y6p:D2 (3.5) BS10 PUB N/A N/A N/A 29045394
    135 5y6p:D2 (3.5) BS11 PUB N/A N/A N/A 29045394
    136 5y6p:D3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    137 5y6p:D3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    138 5y6p:D3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    139 5y6p:D4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    140 5y6p:D4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    141 5y6p:D4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    142 5y6p:D4 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    143 5y6p:D5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    144 5y6p:D5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    145 5y6p:D5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    146 5y6p:D6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    147 5y6p:D6 (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    148 5y6p:D6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    149 5y6p:D6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    150 5y6p:D7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    151 5y6p:D7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    152 5y6p:D7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    153 5y6p:D7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    154 5y6p:D8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    155 5y6p:D8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    156 5y6p:D9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    157 5y6p:D9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    158 5y6p:D9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    159 5y6p:D9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    160 5y6p:E2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    161 5y6p:E2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    162 5y6p:E2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    163 5y6p:E3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    164 5y6p:E3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    165 5y6p:E3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    166 5y6p:E4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    167 5y6p:E4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    168 5y6p:E4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    169 5y6p:E5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    170 5y6p:E5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    171 5y6p:E6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    172 5y6p:E6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    173 5y6p:E7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    174 5y6p:E7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    175 5y6p:E8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    176 5y6p:E8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    177 5y6p:E8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    178 5y6p:E8 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    179 5y6p:E9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    180 5y6p:E9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    181 5y6p:E9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    182 5y6p:F2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    183 5y6p:F2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    184 5y6p:F2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    185 5y6p:F2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    186 5y6p:F2 (3.5) BS05 PUB N/A GO:0015979 ... N/A 29045394
    187 5y6p:F3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    188 5y6p:F3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    189 5y6p:F3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    190 5y6p:F3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    191 5y6p:F4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    192 5y6p:F4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    193 5y6p:F4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    194 5y6p:F5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    195 5y6p:F5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    196 5y6p:F5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    197 5y6p:F6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    198 5y6p:F6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    199 5y6p:F6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    200 5y6p:F6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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