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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xy3:A (3.2) BS01 rna ? GO:0002181 ... A2E6Z8 28809395
    2 5xy3:B (3.2) BS01 rna ? GO:0003723 ... A2DD62 28809395
    3 5xy3:C (3.2) BS01 rna ? GO:0003723 ... A2E4D0 28809395
    4 5xy3:C (3.2) BS02 rna ? GO:0003723 ... A2E4D0 28809395
    5 5xy3:D (3.2) BS01 rna ? GO:0000027 ... A2DNM5 28809395
    6 5xy3:D (3.2) BS02 rna ? GO:0000027 ... A2DNM5 28809395
    7 5xy3:E (3.2) BS01 rna ? GO:0000027 ... A2FXW1 28809395
    8 5xy3:F (3.2) BS01 rna ? GO:0000463 ... A2F592 28809395
    9 5xy3:F (3.2) BS02 rna ? GO:0000463 ... A2F592 28809395
    10 5xy3:G (3.2) BS01 rna ? GO:0000470 ... A2ET60 28809395
    11 5xy3:G (3.2) BS02 rna ? GO:0000470 ... A2ET60 28809395
    12 5xy3:H (3.2) BS01 rna ? GO:0002181 ... A2DDT1 28809395
    13 5xy3:I (3.2) BS01 rna ? GO:0000027 ... A2FVZ6 28809395
    14 5xy3:I (3.2) BS02 rna ? GO:0000027 ... A2FVZ6 28809395
    15 5xy3:J (3.2) BS01 rna ? GO:0003723 ... A2E7L8 28809395
    16 5xy3:J (3.2) BS02 rna ? GO:0003723 ... A2E7L8 28809395
    17 5xy3:L (3.2) BS01 rna ? GO:0003723 ... A2G4E1 28809395
    18 5xy3:L (3.2) BS02 rna ? GO:0003723 ... A2G4E1 28809395
    19 5xy3:M (3.2) BS01 rna ? GO:0003723 ... A2DZ49 28809395
    20 5xy3:N (3.2) BS01 rna ? GO:0002181 ... A2ECR7 28809395
    21 5xy3:N (3.2) BS02 rna ? GO:0002181 ... A2ECR7 28809395
    22 5xy3:O (3.2) BS01 rna ? GO:0003729 ... A2DZ26 28809395
    23 5xy3:P (3.2) BS01 rna ? GO:0002181 ... A2DM53 28809395
    24 5xy3:P (3.2) BS02 rna ? GO:0002181 ... A2DM53 28809395
    25 5xy3:Q (3.2) BS01 rna ? GO:0003723 ... A2D7Q5 28809395
    26 5xy3:R (3.2) BS01 rna ? GO:0003723 ... A2D8G1 28809395
    27 5xy3:S (3.2) BS01 rna ? GO:0003735 ... A2EP03 28809395
    28 5xy3:S (3.2) BS02 rna ? GO:0003735 ... A2EP03 28809395
    29 5xy3:T (3.2) BS01 rna ? GO:0003735 ... A2F2S5 28809395
    30 5xy3:T (3.2) BS02 rna ? GO:0003735 ... A2F2S5 28809395
    31 5xy3:U (3.2) BS01 rna ? GO:0002181 ... A2DNV5 28809395
    32 5xy3:V (3.2) BS01 rna ? GO:0003735 ... A2DP51 28809395
    33 5xy3:W (3.2) BS01 rna ? GO:0005730 ... A2DJQ1 28809395
    34 5xy3:X (3.2) BS01 rna ? GO:0000027 ... A2DUV8 28809395
    35 5xy3:X (3.2) BS02 rna ? GO:0000027 ... A2DUV8 28809395
    36 5xy3:Y (3.2) BS01 rna ? GO:0002181 ... A2DKF2 28809395
    37 5xy3:Y (3.2) BS02 rna ? GO:0002181 ... A2DKF2 28809395
    38 5xy3:Z (3.2) BS01 rna ? GO:0003735 ... A2DNC1 28809395
    39 5xy3:a (3.2) BS01 rna ? GO:0003735 ... A2DHU7 28809395
    40 5xy3:b (3.2) BS01 rna ? GO:0002181 ... A2DM33 28809395
    41 5xy3:c (3.2) BS01 rna ? GO:0003723 ... A2E6Z9 28809395
    42 5xy3:d (3.2) BS01 rna ? GO:0002181 ... A2D9N8 28809395
    43 5xy3:e (3.2) BS01 rna ? GO:0003735 ... A2F2J0 28809395
    44 5xy3:f (3.2) BS01 rna ? GO:0002181 ... A2DSF3 28809395
    45 5xy3:g (3.2) BS01 rna ? GO:0003735 ... A2FWA1 28809395
    46 5xy3:h (3.2) BS01 rna ? GO:0000463 ... A2E6R2 28809395
    47 5xy3:h (3.2) BS02 rna ? GO:0000463 ... A2E6R2 28809395
    48 5xy3:i (3.2) BS01 rna ? GO:0002181 ... A2EXW7 28809395
    49 5xy3:j (3.2) BS01 rna ? GO:0003723 ... A2F8Y8 28809395
    50 5xy3:j (3.2) BS02 rna ? GO:0003723 ... A2F8Y8 28809395
    51 5xy3:k (3.2) BS01 rna ? GO:0003735 ... A2FFH9 28809395
    52 5xy3:l (3.2) BS01 rna ? GO:0003735 ... A2D9N4 28809395
    53 5xy3:l (3.2) BS02 rna ? GO:0003735 ... A2D9N4 28809395
    54 5xy3:m (3.2) BS01 rna ? GO:0003735 ... A2DGL5 28809395
    55 5xy3:o (3.2) BS01 rna ? GO:0003735 ... A2DAI6 28809395
    56 5xy3:p (3.2) BS01 rna ? GO:0003735 ... A2DEM7 28809395
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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