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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xth:2 (3.9) BS01 ZN ? GO:0005740 ... P00428 28844695
    2 5xth:A (3.9) BS01 SF4 7.1.1.2 GO:0005515 ... P49821 28844695
    3 5xth:A (3.9) BS02 FMN 7.1.1.2 GO:0005515 ... P49821 28844695
    4 5xth:AC (3.9) BS01 FES 7.1.1.8 GO:0008121 ... P47985 28844695
    5 5xth:AD (3.9) BS01 PLX ? GO:0005515 ... Q9UDW1 28844695
    6 5xth:AH (3.9) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    7 5xth:AJ (3.9) BS01 HEM ? GO:0001666 ... P00156 28844695
    8 5xth:AJ (3.9) BS02 HEM ? GO:0001666 ... P00156 28844695
    9 5xth:AP (3.9) BS01 FES 7.1.1.8 GO:0008121 ... P47985 28844695
    10 5xth:AP (3.9) BS02 PLX 7.1.1.8 GO:0008121 ... P47985 28844695
    11 5xth:AQ (3.9) BS01 PLX ? GO:0005515 ... Q9UDW1 28844695
    12 5xth:AU (3.9) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    13 5xth:AV (3.9) BS01 HEM ? GO:0001666 ... P00156 28844695
    14 5xth:AV (3.9) BS02 HEM ? GO:0001666 ... P00156 28844695
    15 5xth:B (3.9) BS01 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    16 5xth:B (3.9) BS02 SF4 7.1.1.2 GO:0016020 ... O00217 28844695
    17 5xth:B (3.9) BS03 PLX 7.1.1.2 GO:0016020 ... O00217 28844695
    18 5xth:C (3.9) BS01 SF4 7.1.1.2 GO:0008137 ... O75251 28844695
    19 5xth:E (3.9) BS01 8Q1 ? GO:0045271 ... P56556 28844695
    20 5xth:J (3.9) BS01 NDP ? N/A Q16795 28844695
    21 5xth:M (3.9) BS01 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    22 5xth:M (3.9) BS02 SF4 7.1.1.2 GO:0005515 ... P28331 28844695
    23 5xth:M (3.9) BS03 FES 7.1.1.2 GO:0005515 ... P28331 28844695
    24 5xth:O (3.9) BS01 FES 7.1.1.2 GO:0016491 ... P19404 28844695
    25 5xth:U (3.9) BS01 PLX ? GO:0005515 ... O95167 28844695
    26 5xth:a (3.9) BS01 PLX ? N/A O43674 28844695
    27 5xth:b (3.9) BS01 PLX ? GO:0005515 ... O95139 28844695
    28 5xth:e (3.9) BS01 PLX ? N/A Q9NX14 28844695
    29 5xth:f (3.9) BS01 PLX ? GO:0005739 ... O43677 28844695
    30 5xth:g (3.9) BS01 PLX ? GO:0005515 ... O95298 28844695
    31 5xth:g (3.9) BS02 PLX ? GO:0005515 ... O95298 28844695
    32 5xth:g (3.9) BS03 PLX ? GO:0005515 ... O95298 28844695
    33 5xth:h (3.9) BS01 PLX ? GO:0005515 ... O43920 28844695
    34 5xth:i (3.9) BS01 PLX 7.1.1.2 GO:0001666 ... P03891 28844695
    35 5xth:j (3.9) BS01 PLX 7.1.1.2 GO:0005739 ... B9EE38 28844695
    36 5xth:o (3.9) BS01 PLX ? GO:0005654 ... O95168 28844695
    37 5xth:p (3.9) BS01 8Q1 ? GO:0005515 ... Q9Y6M9 28844695
    38 5xth:r (3.9) BS01 PLX 7.1.1.2 GO:0001666 ... P03905 28844695
    39 5xth:r (3.9) BS02 PLX 7.1.1.2 GO:0001666 ... P03905 28844695
    40 5xth:s (3.9) BS01 PLX 7.1.1.2 GO:0005739 ... H9PGF0 28844695
    41 5xth:s (3.9) BS02 PLX 7.1.1.2 GO:0005739 ... H9PGF0 28844695
    42 5xth:x (3.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 28844695
    43 5xth:x (3.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 28844695
    44 5xth:x (3.9) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 28844695
    45 5xth:x (3.9) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 28844695
    46 5xth:y (3.9) BS01 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    47 5xth:y (3.9) BS02 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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