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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xon:A (3.83) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    2 5xon:A (3.83) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    3 5xon:A (3.83) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    4 5xon:A (3.83) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    5 5xon:A (3.83) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    6 5xon:B (3.83) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 28775211
    7 5xon:B (3.83) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 28775211
    8 5xon:B (3.83) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 28775211
    9 5xon:C (3.83) BS01 ZN ? GO:0000428 ... C4R7L2 28775211
    10 5xon:I (3.83) BS01 ZN ? GO:0000428 ... C4QY79 28775211
    11 5xon:I (3.83) BS02 ZN ? GO:0000428 ... C4QY79 28775211
    12 5xon:J (3.83) BS01 ZN ? GO:0000428 ... C4R009 28775211
    13 5xon:L (3.83) BS01 ZN ? GO:0001054 ... C4QWA8 28775211
    14 5xon:U (3.83) BS01 ZN ? GO:0003676 ... C4R2R6 28775211
    15 5xon:V (3.83) BS01 ZN ? GO:0000775 ... C4R0E6 28775211
    16 5xon:W (3.83) BS01 dna ? GO:0006354 ... C4R370 28775211
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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