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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 264 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5wis:10 (2.703) BS01 rna ? GO:0003735 ... P60493 28934499
    2 5wis:10 (2.703) BS02 rna ? GO:0003735 ... P60493 28934499
    3 5wis:10 (2.703) BS03 MG ? GO:0003735 ... P60493 28934499
    4 5wis:10 (2.703) BS04 MG ? GO:0003735 ... P60493 28934499
    5 5wis:10 (2.703) BS05 MG ? GO:0003735 ... P60493 28934499
    6 5wis:11 (2.703) BS01 rna ? GO:0003735 ... P60494 28934499
    7 5wis:11 (2.703) BS02 MG ? GO:0003735 ... P60494 28934499
    8 5wis:12 (2.703) BS01 rna ? GO:0003735 ... Q5SHP6 28934499
    9 5wis:12 (2.703) BS02 MG ? GO:0003735 ... Q5SHP6 28934499
    10 5wis:13 (2.703) BS01 rna ? GO:0003735 ... Q5SHQ6 28934499
    11 5wis:13 (2.703) BS02 rna ? GO:0003735 ... Q5SHQ6 28934499
    12 5wis:13 (2.703) BS03 MG ? GO:0003735 ... Q5SHQ6 28934499
    13 5wis:13 (2.703) BS04 MG ? GO:0003735 ... Q5SHQ6 28934499
    14 5wis:14 (2.703) BS01 rna ? GO:0003735 ... Q5SJE1 28934499
    15 5wis:14 (2.703) BS02 ZN ? GO:0003735 ... Q5SJE1 28934499
    16 5wis:15 (2.703) BS01 rna ? GO:0003735 ... P80339 28934499
    17 5wis:15 (2.703) BS02 ZN ? GO:0003735 ... P80339 28934499
    18 5wis:16 (2.703) BS01 rna ? GO:0000049 ... P35871 28934499
    19 5wis:16 (2.703) BS02 MG ? GO:0000049 ... P35871 28934499
    20 5wis:16 (2.703) BS03 ZN ? GO:0000049 ... P35871 28934499
    21 5wis:16 (2.703) BS04 MG ? GO:0000049 ... P35871 28934499
    22 5wis:17 (2.703) BS01 rna ? GO:0003735 ... P80340 28934499
    23 5wis:17 (2.703) BS02 MG ? GO:0003735 ... P80340 28934499
    24 5wis:17 (2.703) BS03 MG ? GO:0003735 ... P80340 28934499
    25 5wis:18 (2.703) BS01 rna ? GO:0003735 ... P80341 28934499
    26 5wis:18 (2.703) BS02 MG ? GO:0003735 ... P80341 28934499
    27 5wis:18 (2.703) BS03 MG ? GO:0003735 ... P80341 28934499
    28 5wis:18 (2.703) BS04 MG ? GO:0003735 ... P80341 28934499
    29 5wis:19 (2.703) BS01 rna ? GO:0003735 ... Q5SHR2 28934499
    30 5wis:19 (2.703) BS02 ZN ? GO:0003735 ... Q5SHR2 28934499
    31 5wis:1D (2.703) BS01 rna ? GO:0002181 ... P60405 28934499
    32 5wis:1D (2.703) BS02 rna ? GO:0002181 ... P60405 28934499
    33 5wis:1D (2.703) BS03 MG ? GO:0002181 ... P60405 28934499
    34 5wis:1D (2.703) BS04 MG ? GO:0002181 ... P60405 28934499
    35 5wis:1D (2.703) BS05 MG ? GO:0002181 ... P60405 28934499
    36 5wis:1D (2.703) BS06 MG ? GO:0002181 ... P60405 28934499
    37 5wis:1D (2.703) BS07 MG ? GO:0002181 ... P60405 28934499
    38 5wis:1D (2.703) BS08 MG ? GO:0002181 ... P60405 28934499
    39 5wis:1D (2.703) BS09 MG ? GO:0002181 ... P60405 28934499
    40 5wis:1D (2.703) BS10 MG ? GO:0002181 ... P60405 28934499
    41 5wis:1D (2.703) BS11 MG ? GO:0002181 ... P60405 28934499
    42 5wis:1E (2.703) BS01 rna ? GO:0003735 ... Q5SHN8 28934499
    43 5wis:1E (2.703) BS02 MG ? GO:0003735 ... Q5SHN8 28934499
    44 5wis:1E (2.703) BS03 MG ? GO:0003735 ... Q5SHN8 28934499
    45 5wis:1E (2.703) BS04 MG ? GO:0003735 ... Q5SHN8 28934499
    46 5wis:1F (2.703) BS01 rna ? GO:0003735 ... Q5SHN9 28934499
    47 5wis:1F (2.703) BS02 MG ? GO:0003735 ... Q5SHN9 28934499
    48 5wis:1F (2.703) BS03 MG ? GO:0003735 ... Q5SHN9 28934499
    49 5wis:1F (2.703) BS04 MG ? GO:0003735 ... Q5SHN9 28934499
    50 5wis:1F (2.703) BS05 MG ? GO:0003735 ... Q5SHN9 28934499
    51 5wis:1F (2.703) BS06 MG ? GO:0003735 ... Q5SHN9 28934499
    52 5wis:1F (2.703) BS07 MG ? GO:0003735 ... Q5SHN9 28934499
    53 5wis:1G (2.703) BS01 rna ? GO:0000049 ... Q5SHQ0 28934499
    54 5wis:1G (2.703) BS02 rna ? GO:0000049 ... Q5SHQ0 28934499
    55 5wis:1G (2.703) BS03 rna ? GO:0000049 ... Q5SHQ0 28934499
    56 5wis:1G (2.703) BS04 MG ? GO:0000049 ... Q5SHQ0 28934499
    57 5wis:1G (2.703) BS05 MG ? GO:0000049 ... Q5SHQ0 28934499
    58 5wis:1H (2.703) BS01 rna ? GO:0002181 ... P0DOY8 28934499
    59 5wis:1I (2.703) BS01 rna ? GO:0003735 ... Q5SLQ1 28934499
    60 5wis:1N (2.703) BS01 rna ? GO:0003729 ... P60488 28934499
    61 5wis:1N (2.703) BS02 MG ? GO:0003729 ... P60488 28934499
    62 5wis:1N (2.703) BS03 MG ? GO:0003729 ... P60488 28934499
    63 5wis:1N (2.703) BS04 MG ? GO:0003729 ... P60488 28934499
    64 5wis:1N (2.703) BS05 MG ? GO:0003729 ... P60488 28934499
    65 5wis:1O (2.703) BS01 rna ? GO:0003735 ... Q5SHP8 28934499
    66 5wis:1O (2.703) BS02 rna ? GO:0003735 ... Q5SHP8 28934499
    67 5wis:1O (2.703) BS03 MG ? GO:0003735 ... Q5SHP8 28934499
    68 5wis:1O (2.703) BS04 MG ? GO:0003735 ... Q5SHP8 28934499
    69 5wis:1P (2.703) BS01 rna ? GO:0003735 ... Q5SHQ7 28934499
    70 5wis:1P (2.703) BS02 MG ? GO:0003735 ... Q5SHQ7 28934499
    71 5wis:1P (2.703) BS03 MG ? GO:0003735 ... Q5SHQ7 28934499
    72 5wis:1P (2.703) BS04 MG ? GO:0003735 ... Q5SHQ7 28934499
    73 5wis:1P (2.703) BS05 MG ? GO:0003735 ... Q5SHQ7 28934499
    74 5wis:1P (2.703) BS06 MG ? GO:0003735 ... Q5SHQ7 28934499
    75 5wis:1Q (2.703) BS01 rna ? GO:0000049 ... P60489 28934499
    76 5wis:1Q (2.703) BS02 rna ? GO:0000049 ... P60489 28934499
    77 5wis:1Q (2.703) BS03 rna ? GO:0000049 ... P60489 28934499
    78 5wis:1Q (2.703) BS04 MG ? GO:0000049 ... P60489 28934499
    79 5wis:1Q (2.703) BS05 MG ? GO:0000049 ... P60489 28934499
    80 5wis:1Q (2.703) BS06 MG ? GO:0000049 ... P60489 28934499
    81 5wis:1Q (2.703) BS07 MG ? GO:0000049 ... P60489 28934499
    82 5wis:1Q (2.703) BS08 MG ? GO:0000049 ... P60489 28934499
    83 5wis:1R (2.703) BS01 rna ? GO:0003735 ... Q9Z9H5 28934499
    84 5wis:1R (2.703) BS02 MG ? GO:0003735 ... Q9Z9H5 28934499
    85 5wis:1R (2.703) BS03 MG ? GO:0003735 ... Q9Z9H5 28934499
    86 5wis:1S (2.703) BS01 rna ? GO:0003735 ... Q5SHQ4 28934499
    87 5wis:1S (2.703) BS02 rna ? GO:0003735 ... Q5SHQ4 28934499
    88 5wis:1S (2.703) BS03 MG ? GO:0003735 ... Q5SHQ4 28934499
    89 5wis:1S (2.703) BS04 MG ? GO:0003735 ... Q5SHQ4 28934499
    90 5wis:1T (2.703) BS01 rna ? GO:0003735 ... P60490 28934499
    91 5wis:1T (2.703) BS02 rna ? GO:0003735 ... P60490 28934499
    92 5wis:1U (2.703) BS01 rna ? GO:0000027 ... P60491 28934499
    93 5wis:1U (2.703) BS02 MG ? GO:0000027 ... P60491 28934499
    94 5wis:1U (2.703) BS03 MG ? GO:0000027 ... P60491 28934499
    95 5wis:1U (2.703) BS04 MG ? GO:0000027 ... P60491 28934499
    96 5wis:1U (2.703) BS05 MG ? GO:0000027 ... P60491 28934499
    97 5wis:1U (2.703) BS06 MG ? GO:0000027 ... P60491 28934499
    98 5wis:1U (2.703) BS07 MG ? GO:0000027 ... P60491 28934499
    99 5wis:1U (2.703) BS08 MG ? GO:0000027 ... P60491 28934499
    100 5wis:1V (2.703) BS01 rna ? GO:0003723 ... P60492 28934499
    101 5wis:1V (2.703) BS02 MG ? GO:0003723 ... P60492 28934499
    102 5wis:1V (2.703) BS03 MG ? GO:0003723 ... P60492 28934499
    103 5wis:1V (2.703) BS04 MG ? GO:0003723 ... P60492 28934499
    104 5wis:1V (2.703) BS05 MG ? GO:0003723 ... P60492 28934499
    105 5wis:1V (2.703) BS06 MG ? GO:0003723 ... P60492 28934499
    106 5wis:1W (2.703) BS01 rna ? GO:0003735 ... Q5SHP3 28934499
    107 5wis:1W (2.703) BS02 MG ? GO:0003735 ... Q5SHP3 28934499
    108 5wis:1W (2.703) BS03 MG ? GO:0003735 ... Q5SHP3 28934499
    109 5wis:1W (2.703) BS04 MG ? GO:0003735 ... Q5SHP3 28934499
    110 5wis:1W (2.703) BS05 MG ? GO:0003735 ... Q5SHP3 28934499
    111 5wis:1W (2.703) BS06 MG ? GO:0003735 ... Q5SHP3 28934499
    112 5wis:1X (2.703) BS01 rna ? GO:0000027 ... Q5SHP0 28934499
    113 5wis:1X (2.703) BS02 MG ? GO:0000027 ... Q5SHP0 28934499
    114 5wis:1X (2.703) BS03 MG ? GO:0000027 ... Q5SHP0 28934499
    115 5wis:1X (2.703) BS04 MG ? GO:0000027 ... Q5SHP0 28934499
    116 5wis:1X (2.703) BS05 MG ? GO:0000027 ... Q5SHP0 28934499
    117 5wis:1X (2.703) BS06 MG ? GO:0000027 ... Q5SHP0 28934499
    118 5wis:1Y (2.703) BS01 rna ? GO:0003723 ... Q5SHP9 28934499
    119 5wis:1Y (2.703) BS02 ZN ? GO:0003723 ... Q5SHP9 28934499
    120 5wis:1Y (2.703) BS03 MG ? GO:0003723 ... Q5SHP9 28934499
    121 5wis:1Z (2.703) BS01 rna ? GO:0003723 ... Q5SHZ1 28934499
    122 5wis:1Z (2.703) BS02 rna ? GO:0003723 ... Q5SHZ1 28934499
    123 5wis:1Z (2.703) BS03 MG ? GO:0003723 ... Q5SHZ1 28934499
    124 5wis:1b (2.703) BS01 rna ? GO:0003735 ... P80371 28934499
    125 5wis:1b (2.703) BS02 MG ? GO:0003735 ... P80371 28934499
    126 5wis:1c (2.703) BS01 rna ? GO:0003676 ... P80372 28934499
    127 5wis:1d (2.703) BS01 rna ? GO:0003723 ... P80373 28934499
    128 5wis:1d (2.703) BS02 SF4 ? GO:0003723 ... P80373 28934499
    129 5wis:1e (2.703) BS01 rna ? GO:0003723 ... Q5SHQ5 28934499
    130 5wis:1e (2.703) BS02 MG ? GO:0003723 ... Q5SHQ5 28934499
    131 5wis:1e (2.703) BS03 MG ? GO:0003723 ... Q5SHQ5 28934499
    132 5wis:1f (2.703) BS01 rna ? GO:0003735 ... Q5SLP8 28934499
    133 5wis:1f (2.703) BS02 MG ? GO:0003735 ... Q5SLP8 28934499
    134 5wis:1g (2.703) BS01 rna ? GO:0000028 ... P17291 28934499
    135 5wis:1g (2.703) BS02 rna ? GO:0000028 ... P17291 28934499
    136 5wis:1h (2.703) BS01 rna ? GO:0003735 ... P0DOY9 28934499
    137 5wis:1i (2.703) BS01 rna ? GO:0000049 ... P80374 28934499
    138 5wis:1i (2.703) BS02 rna ? GO:0000049 ... P80374 28934499
    139 5wis:1j (2.703) BS01 rna ? GO:0000049 ... Q5SHN7 28934499
    140 5wis:1k (2.703) BS01 rna ? GO:0003735 ... P80376 28934499
    141 5wis:1k (2.703) BS02 MG ? GO:0003735 ... P80376 28934499
    142 5wis:1l (2.703) BS01 rna ? GO:0000049 ... Q5SHN3 28934499
    143 5wis:1l (2.703) BS02 rna ? GO:0000049 ... Q5SHN3 28934499
    144 5wis:1m (2.703) BS01 rna ? GO:0000049 ... P80377 28934499
    145 5wis:1m (2.703) BS02 rna ? GO:0000049 ... P80377 28934499
    146 5wis:1m (2.703) BS03 MG ? GO:0000049 ... P80377 28934499
    147 5wis:1n (2.703) BS01 rna ? GO:0003735 ... P0DOY6 28934499
    148 5wis:1n (2.703) BS02 ZN ? GO:0003735 ... P0DOY6 28934499
    149 5wis:1n (2.703) BS03 MG ? GO:0003735 ... P0DOY6 28934499
    150 5wis:1o (2.703) BS01 rna ? GO:0003735 ... Q5SJ76 28934499
    151 5wis:1o (2.703) BS02 rna ? GO:0003735 ... Q5SJ76 28934499
    152 5wis:1p (2.703) BS01 rna ? GO:0003735 ... Q5SJH3 28934499
    153 5wis:1q (2.703) BS01 rna ? GO:0003735 ... P0DOY7 28934499
    154 5wis:1r (2.703) BS01 rna ? GO:0003735 ... Q5SLQ0 28934499
    155 5wis:1s (2.703) BS01 rna ? GO:0000028 ... Q5SHP2 28934499
    156 5wis:1t (2.703) BS01 rna ? GO:0003723 ... P80380 28934499
    157 5wis:1t (2.703) BS02 MG ? GO:0003723 ... P80380 28934499
    158 5wis:20 (2.703) BS01 rna ? GO:0003735 ... P60493 28934499
    159 5wis:20 (2.703) BS02 rna ? GO:0003735 ... P60493 28934499
    160 5wis:21 (2.703) BS01 rna ? GO:0003735 ... P60494 28934499
    161 5wis:21 (2.703) BS02 rna ? GO:0003735 ... P60494 28934499
    162 5wis:22 (2.703) BS01 rna ? GO:0003735 ... Q5SHP6 28934499
    163 5wis:23 (2.703) BS01 rna ? GO:0003735 ... Q5SHQ6 28934499
    164 5wis:23 (2.703) BS02 rna ? GO:0003735 ... Q5SHQ6 28934499
    165 5wis:23 (2.703) BS03 MG ? GO:0003735 ... Q5SHQ6 28934499
    166 5wis:23 (2.703) BS04 MG ? GO:0003735 ... Q5SHQ6 28934499
    167 5wis:24 (2.703) BS01 rna ? GO:0003735 ... Q5SJE1 28934499
    168 5wis:24 (2.703) BS02 ZN ? GO:0003735 ... Q5SJE1 28934499
    169 5wis:25 (2.703) BS01 rna ? GO:0003735 ... P80339 28934499
    170 5wis:25 (2.703) BS02 MG ? GO:0003735 ... P80339 28934499
    171 5wis:25 (2.703) BS03 MG ? GO:0003735 ... P80339 28934499
    172 5wis:25 (2.703) BS04 ZN ? GO:0003735 ... P80339 28934499
    173 5wis:26 (2.703) BS01 rna ? GO:0000049 ... P35871 28934499
    174 5wis:26 (2.703) BS02 ZN ? GO:0000049 ... P35871 28934499
    175 5wis:26 (2.703) BS03 MG ? GO:0000049 ... P35871 28934499
    176 5wis:27 (2.703) BS01 rna ? GO:0003735 ... P80340 28934499
    177 5wis:27 (2.703) BS02 MG ? GO:0003735 ... P80340 28934499
    178 5wis:28 (2.703) BS01 rna ? GO:0003735 ... P80341 28934499
    179 5wis:29 (2.703) BS01 rna ? GO:0003735 ... Q5SHR2 28934499
    180 5wis:29 (2.703) BS02 ZN ? GO:0003735 ... Q5SHR2 28934499
    181 5wis:2D (2.703) BS01 rna ? GO:0002181 ... P60405 28934499
    182 5wis:2D (2.703) BS02 rna ? GO:0002181 ... P60405 28934499
    183 5wis:2D (2.703) BS03 MG ? GO:0002181 ... P60405 28934499
    184 5wis:2D (2.703) BS04 MG ? GO:0002181 ... P60405 28934499
    185 5wis:2D (2.703) BS05 MG ? GO:0002181 ... P60405 28934499
    186 5wis:2D (2.703) BS06 MG ? GO:0002181 ... P60405 28934499
    187 5wis:2D (2.703) BS07 MG ? GO:0002181 ... P60405 28934499
    188 5wis:2E (2.703) BS01 rna ? GO:0003735 ... Q5SHN8 28934499
    189 5wis:2E (2.703) BS02 MG ? GO:0003735 ... Q5SHN8 28934499
    190 5wis:2F (2.703) BS01 rna ? GO:0003735 ... Q5SHN9 28934499
    191 5wis:2F (2.703) BS02 MG ? GO:0003735 ... Q5SHN9 28934499
    192 5wis:2F (2.703) BS03 MG ? GO:0003735 ... Q5SHN9 28934499
    193 5wis:2G (2.703) BS01 rna ? GO:0000049 ... Q5SHQ0 28934499
    194 5wis:2G (2.703) BS02 rna ? GO:0000049 ... Q5SHQ0 28934499
    195 5wis:2G (2.703) BS03 rna ? GO:0000049 ... Q5SHQ0 28934499
    196 5wis:2H (2.703) BS01 rna ? GO:0002181 ... P0DOY8 28934499
    197 5wis:2I (2.703) BS01 rna ? GO:0003735 ... Q5SLQ1 28934499
    198 5wis:2N (2.703) BS01 rna ? GO:0003729 ... P60488 28934499
    199 5wis:2O (2.703) BS01 rna ? GO:0003735 ... Q5SHP8 28934499
    200 5wis:2O (2.703) BS02 rna ? GO:0003735 ... Q5SHP8 28934499
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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