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BioLiP
Download all results in tab-seperated text for 73 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5we4:0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 29733411
    2 5we4:1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 29733411
    3 5we4:1 (3.1) BS02 rna ? GO:0000027 ... P0A7N9 29733411
    4 5we4:2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 29733411
    5 5we4:3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 29733411
    6 5we4:4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 29733411
    7 5we4:5 (3.1) BS01 rna ? GO:0003735 ... P0A7J3 29733411
    8 5we4:6 (3.1) BS01 rna ? GO:0002181 ... P0A7M9 29733411
    9 5we4:C (3.1) BS01 rna ? GO:0000027 ... P60422 29733411
    10 5we4:D (3.1) BS01 rna ? GO:0000027 ... P60438 29733411
    11 5we4:D (3.1) BS02 MG ? GO:0000027 ... P60438 29733411
    12 5we4:E (3.1) BS01 rna ? GO:0001070 ... P60723 29733411
    13 5we4:F (3.1) BS01 rna ? GO:0000027 ... P62399 29733411
    14 5we4:F (3.1) BS02 rna ? GO:0000027 ... P62399 29733411
    15 5we4:F (3.1) BS03 rna ? GO:0000027 ... P62399 29733411
    16 5we4:G (3.1) BS01 rna ? GO:0000027 ... P0AG55 29733411
    17 5we4:H (3.1) BS01 rna ? GO:0002181 ... P0A7R1 29733411
    18 5we4:I (3.1) BS01 rna ? GO:0000027 ... P0A7J7 29733411
    19 5we4:J (3.1) BS01 rna ? GO:0002181 ... P0AA10 29733411
    20 5we4:K (3.1) BS01 rna ? GO:0002181 ... P0ADY3 29733411
    21 5we4:K (3.1) BS02 rna ? GO:0002181 ... P0ADY3 29733411
    22 5we4:L (3.1) BS01 rna ? GO:0002181 ... P02413 29733411
    23 5we4:M (3.1) BS01 rna ? GO:0000027 ... P0ADY7 29733411
    24 5we4:M (3.1) BS02 rna ? GO:0000027 ... P0ADY7 29733411
    25 5we4:N (3.1) BS01 rna ? GO:0000027 ... P0AG44 29733411
    26 5we4:O (3.1) BS01 rna ? GO:0002181 ... P0C018 29733411
    27 5we4:O (3.1) BS02 rna ? GO:0002181 ... P0C018 29733411
    28 5we4:P (3.1) BS01 rna ? GO:0000027 ... P0A7K6 29733411
    29 5we4:P (3.1) BS02 rna ? GO:0000027 ... P0A7K6 29733411
    30 5we4:Q (3.1) BS01 rna ? GO:0000027 ... P0A7L3 29733411
    31 5we4:R (3.1) BS01 rna ? GO:0002181 ... P0AG48 29733411
    32 5we4:S (3.1) BS01 rna ? GO:0002181 ... P61175 29733411
    33 5we4:T (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 29733411
    34 5we4:U (3.1) BS01 rna ? GO:0000027 ... P60624 29733411
    35 5we4:V (3.1) BS01 rna ? GO:0000027 ... P68919 29733411
    36 5we4:V (3.1) BS02 rna ? GO:0000027 ... P68919 29733411
    37 5we4:W (3.1) BS01 rna ? GO:0003735 ... P0A7L8 29733411
    38 5we4:W (3.1) BS02 rna ? GO:0003735 ... P0A7L8 29733411
    39 5we4:X (3.1) BS01 rna ? GO:0000027 ... P0A7M2 29733411
    40 5we4:Y (3.1) BS01 rna ? GO:0000027 ... P0A7M6 29733411
    41 5we4:Z (3.1) BS01 rna ? GO:0000027 ... P0AG51 29733411
    42 5we4:Z (3.1) BS02 rna ? GO:0000027 ... P0AG51 29733411
    43 5we4:b (3.1) BS01 rna ? GO:0000028 ... P0A7V0 29733411
    44 5we4:c (3.1) BS01 rna ? GO:0003676 ... P0A7V3 29733411
    45 5we4:d (3.1) BS01 rna ? GO:0000028 ... P0A7V8 29733411
    46 5we4:e (3.1) BS01 rna ? GO:0000028 ... P0A7W1 29733411
    47 5we4:e (3.1) BS02 rna ? GO:0000028 ... P0A7W1 29733411
    48 5we4:f (3.1) BS01 rna ? GO:0003735 ... P02358 29733411
    49 5we4:g (3.1) BS01 rna ? GO:0003723 ... P02359 29733411
    50 5we4:g (3.1) BS02 rna ? GO:0003723 ... P02359 29733411
    51 5we4:h (3.1) BS01 rna ? GO:0000028 ... P0A7W7 29733411
    52 5we4:i (3.1) BS01 rna ? GO:0000049 ... P0A7X3 29733411
    53 5we4:i (3.1) BS02 rna ? GO:0000049 ... P0A7X3 29733411
    54 5we4:j (3.1) BS01 rna ? GO:0000049 ... P0A7R5 29733411
    55 5we4:k (3.1) BS01 rna ? GO:0002181 ... P0A7R9 29733411
    56 5we4:l (3.1) BS01 rna ? GO:0000049 ... P0A7S3 29733411
    57 5we4:m (3.1) BS01 rna ? GO:0000049 ... P0A7S9 29733411
    58 5we4:m (3.1) BS02 rna ? GO:0000049 ... P0A7S9 29733411
    59 5we4:n (3.1) BS01 rna ? GO:0003735 ... P0AG59 29733411
    60 5we4:o (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 29733411
    61 5we4:o (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 29733411
    62 5we4:p (3.1) BS01 rna ? GO:0000028 ... P0A7T3 29733411
    63 5we4:q (3.1) BS01 rna ? GO:0000028 ... P0AG63 29733411
    64 5we4:r (3.1) BS01 rna ? GO:0003735 ... P0A7T7 29733411
    65 5we4:s (3.1) BS01 rna ? GO:0003723 ... P0A7U3 29733411
    66 5we4:t (3.1) BS01 rna ? GO:0000028 ... P0A7U7 29733411
    67 5we4:u (3.1) BS01 rna ? GO:0000028 ... P68679 29733411
    68 5we4:z (3.1) BS01 rna ? GO:0003723 ... P0CE48 29733411
    69 5we4:z (3.1) BS02 rna ? GO:0003723 ... P0CE48 29733411
    70 5we4:z (3.1) BS03 rna ? GO:0003723 ... P0CE48 29733411
    71 5we4:z (3.1) BS04 PHE ? GO:0003723 ... P0CE48 29733411
    72 5we4:z (3.1) BS05 GNP ? GO:0003723 ... P0CE48 29733411
    73 5we4:z (3.1) BS06 MG ? GO:0003723 ... P0CE48 29733411
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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