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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5w4u:A (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P04050 28933854
    2 5w4u:A (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P04050 28933854
    3 5w4u:A (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 28933854
    4 5w4u:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 28933854
    5 5w4u:A (3.6) BS05 MG 2.7.7.6 GO:0000428 ... P04050 28933854
    6 5w4u:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P08518 28933854
    7 5w4u:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P08518 28933854
    8 5w4u:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 28933854
    9 5w4u:C (3.6) BS01 ZN ? GO:0000428 ... P16370 28933854
    10 5w4u:I (3.6) BS01 ZN ? GO:0000428 ... P27999 28933854
    11 5w4u:I (3.6) BS02 ZN ? GO:0000428 ... P27999 28933854
    12 5w4u:J (3.6) BS01 ZN ? GO:0000428 ... P22139 28933854
    13 5w4u:L (3.6) BS01 ZN ? GO:0000428 ... P40422 28933854
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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