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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 271 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5w4k:10 (2.7) BS01 rna ? GO:0003735 ... P60493 28846667
    2 5w4k:10 (2.7) BS02 rna ? GO:0003735 ... P60493 28846667
    3 5w4k:10 (2.7) BS03 MG ? GO:0003735 ... P60493 28846667
    4 5w4k:10 (2.7) BS04 MG ? GO:0003735 ... P60493 28846667
    5 5w4k:11 (2.7) BS01 rna ? GO:0003735 ... P60494 28846667
    6 5w4k:11 (2.7) BS02 rna ? GO:0003735 ... P60494 28846667
    7 5w4k:11 (2.7) BS03 MG ? GO:0003735 ... P60494 28846667
    8 5w4k:11 (2.7) BS04 MG ? GO:0003735 ... P60494 28846667
    9 5w4k:12 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 28846667
    10 5w4k:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 28846667
    11 5w4k:13 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 28846667
    12 5w4k:13 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 28846667
    13 5w4k:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 28846667
    14 5w4k:14 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 28846667
    15 5w4k:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 28846667
    16 5w4k:15 (2.7) BS01 rna ? GO:0003735 ... P80339 28846667
    17 5w4k:15 (2.7) BS02 MG ? GO:0003735 ... P80339 28846667
    18 5w4k:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 28846667
    19 5w4k:16 (2.7) BS01 rna ? GO:0000049 ... P35871 28846667
    20 5w4k:16 (2.7) BS02 ZN ? GO:0000049 ... P35871 28846667
    21 5w4k:16 (2.7) BS03 MG ? GO:0000049 ... P35871 28846667
    22 5w4k:17 (2.7) BS01 rna ? GO:0003735 ... P80340 28846667
    23 5w4k:17 (2.7) BS02 MG ? GO:0003735 ... P80340 28846667
    24 5w4k:17 (2.7) BS03 MG ? GO:0003735 ... P80340 28846667
    25 5w4k:18 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 28846667
    26 5w4k:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 28846667
    27 5w4k:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 28846667
    28 5w4k:18 (2.7) BS04 MG ? GO:0003735 ... Q5SKU1 28846667
    29 5w4k:19 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 28846667
    30 5w4k:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 28846667
    31 5w4k:1D (2.7) BS01 rna ? GO:0002181 ... P60405 28846667
    32 5w4k:1D (2.7) BS02 rna ? GO:0002181 ... P60405 28846667
    33 5w4k:1D (2.7) BS03 MG ? GO:0002181 ... P60405 28846667
    34 5w4k:1D (2.7) BS04 MG ? GO:0002181 ... P60405 28846667
    35 5w4k:1D (2.7) BS05 MG ? GO:0002181 ... P60405 28846667
    36 5w4k:1D (2.7) BS06 MG ? GO:0002181 ... P60405 28846667
    37 5w4k:1D (2.7) BS07 MG ? GO:0002181 ... P60405 28846667
    38 5w4k:1D (2.7) BS08 MG ? GO:0002181 ... P60405 28846667
    39 5w4k:1D (2.7) BS09 MG ? GO:0002181 ... P60405 28846667
    40 5w4k:1D (2.7) BS10 MG ? GO:0002181 ... P60405 28846667
    41 5w4k:1D (2.7) BS11 MG ? GO:0002181 ... P60405 28846667
    42 5w4k:1E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 28846667
    43 5w4k:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 28846667
    44 5w4k:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 28846667
    45 5w4k:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 28846667
    46 5w4k:1F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 28846667
    47 5w4k:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 28846667
    48 5w4k:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 28846667
    49 5w4k:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 28846667
    50 5w4k:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 28846667
    51 5w4k:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 28846667
    52 5w4k:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 28846667
    53 5w4k:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 28846667
    54 5w4k:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 28846667
    55 5w4k:1F (2.7) BS10 MG ? GO:0003735 ... Q5SHN9 28846667
    56 5w4k:1F (2.7) BS11 MG ? GO:0003735 ... Q5SHN9 28846667
    57 5w4k:1F (2.7) BS12 MG ? GO:0003735 ... Q5SHN9 28846667
    58 5w4k:1G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 28846667
    59 5w4k:1G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 28846667
    60 5w4k:1G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 28846667
    61 5w4k:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 28846667
    62 5w4k:1G (2.7) BS05 MG ? GO:0000049 ... Q5SHQ0 28846667
    63 5w4k:1G (2.7) BS06 MG ? GO:0000049 ... Q5SHQ0 28846667
    64 5w4k:1H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 28846667
    65 5w4k:1I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 28846667
    66 5w4k:1I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 28846667
    67 5w4k:1N (2.7) BS01 rna ? GO:0003729 ... P60488 28846667
    68 5w4k:1N (2.7) BS02 MG ? GO:0003729 ... P60488 28846667
    69 5w4k:1N (2.7) BS03 MG ? GO:0003729 ... P60488 28846667
    70 5w4k:1O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 28846667
    71 5w4k:1O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 28846667
    72 5w4k:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 28846667
    73 5w4k:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 28846667
    74 5w4k:1P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 28846667
    75 5w4k:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 28846667
    76 5w4k:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 28846667
    77 5w4k:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 28846667
    78 5w4k:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 28846667
    79 5w4k:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 28846667
    80 5w4k:1P (2.7) BS07 MG ? GO:0003735 ... Q5SHQ7 28846667
    81 5w4k:1Q (2.7) BS01 rna ? GO:0000049 ... P60489 28846667
    82 5w4k:1Q (2.7) BS02 rna ? GO:0000049 ... P60489 28846667
    83 5w4k:1Q (2.7) BS03 rna ? GO:0000049 ... P60489 28846667
    84 5w4k:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 28846667
    85 5w4k:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 28846667
    86 5w4k:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 28846667
    87 5w4k:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 28846667
    88 5w4k:1Q (2.7) BS08 MG ? GO:0000049 ... P60489 28846667
    89 5w4k:1R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 28846667
    90 5w4k:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 28846667
    91 5w4k:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 28846667
    92 5w4k:1S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 28846667
    93 5w4k:1S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 28846667
    94 5w4k:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 28846667
    95 5w4k:1S (2.7) BS04 MG ? GO:0003735 ... Q5SHQ4 28846667
    96 5w4k:1T (2.7) BS01 rna ? GO:0003735 ... P60490 28846667
    97 5w4k:1T (2.7) BS02 rna ? GO:0003735 ... P60490 28846667
    98 5w4k:1U (2.7) BS01 rna ? GO:0000027 ... P60491 28846667
    99 5w4k:1U (2.7) BS02 MG ? GO:0000027 ... P60491 28846667
    100 5w4k:1U (2.7) BS03 MG ? GO:0000027 ... P60491 28846667
    101 5w4k:1U (2.7) BS04 MG ? GO:0000027 ... P60491 28846667
    102 5w4k:1U (2.7) BS05 MG ? GO:0000027 ... P60491 28846667
    103 5w4k:1U (2.7) BS06 MG ? GO:0000027 ... P60491 28846667
    104 5w4k:1U (2.7) BS07 MG ? GO:0000027 ... P60491 28846667
    105 5w4k:1U (2.7) BS08 MG ? GO:0000027 ... P60491 28846667
    106 5w4k:1U (2.7) BS09 MG ? GO:0000027 ... P60491 28846667
    107 5w4k:1V (2.7) BS01 rna ? GO:0003723 ... P60492 28846667
    108 5w4k:1V (2.7) BS02 MG ? GO:0003723 ... P60492 28846667
    109 5w4k:1V (2.7) BS03 MG ? GO:0003723 ... P60492 28846667
    110 5w4k:1V (2.7) BS04 MG ? GO:0003723 ... P60492 28846667
    111 5w4k:1V (2.7) BS05 MG ? GO:0003723 ... P60492 28846667
    112 5w4k:1V (2.7) BS06 MG ? GO:0003723 ... P60492 28846667
    113 5w4k:1V (2.7) BS07 MG ? GO:0003723 ... P60492 28846667
    114 5w4k:1W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 28846667
    115 5w4k:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 28846667
    116 5w4k:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 28846667
    117 5w4k:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 28846667
    118 5w4k:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 28846667
    119 5w4k:1X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 28846667
    120 5w4k:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 28846667
    121 5w4k:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 28846667
    122 5w4k:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 28846667
    123 5w4k:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 28846667
    124 5w4k:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 28846667
    125 5w4k:1Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 28846667
    126 5w4k:1Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 28846667
    127 5w4k:1Y (2.7) BS03 MG ? GO:0003723 ... Q5SHP9 28846667
    128 5w4k:1Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 28846667
    129 5w4k:1Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 28846667
    130 5w4k:1b (2.7) BS01 rna ? GO:0003735 ... P80371 28846667
    131 5w4k:1b (2.7) BS02 MG ? GO:0003735 ... P80371 28846667
    132 5w4k:1c (2.7) BS01 rna ? GO:0003676 ... P80372 28846667
    133 5w4k:1d (2.7) BS01 rna ? GO:0003723 ... P80373 28846667
    134 5w4k:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 28846667
    135 5w4k:1e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 28846667
    136 5w4k:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 28846667
    137 5w4k:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 28846667
    138 5w4k:1f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 28846667
    139 5w4k:1f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 28846667
    140 5w4k:1g (2.7) BS01 rna ? GO:0000028 ... P17291 28846667
    141 5w4k:1g (2.7) BS02 rna ? GO:0000028 ... P17291 28846667
    142 5w4k:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 28846667
    143 5w4k:1i (2.7) BS01 rna ? GO:0000049 ... P80374 28846667
    144 5w4k:1i (2.7) BS02 rna ? GO:0000049 ... P80374 28846667
    145 5w4k:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 28846667
    146 5w4k:1k (2.7) BS01 rna ? GO:0003735 ... P80376 28846667
    147 5w4k:1k (2.7) BS02 MG ? GO:0003735 ... P80376 28846667
    148 5w4k:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 28846667
    149 5w4k:1l (2.7) BS02 rna ? GO:0000049 ... Q5SHN3 28846667
    150 5w4k:1l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 28846667
    151 5w4k:1m (2.7) BS01 rna ? GO:0000049 ... P80377 28846667
    152 5w4k:1m (2.7) BS02 rna ? GO:0000049 ... P80377 28846667
    153 5w4k:1m (2.7) BS03 rna ? GO:0000049 ... P80377 28846667
    154 5w4k:1m (2.7) BS04 MG ? GO:0000049 ... P80377 28846667
    155 5w4k:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 28846667
    156 5w4k:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 28846667
    157 5w4k:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 28846667
    158 5w4k:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 28846667
    159 5w4k:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 28846667
    160 5w4k:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 28846667
    161 5w4k:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 28846667
    162 5w4k:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 28846667
    163 5w4k:1t (2.7) BS01 rna ? GO:0003723 ... P80380 28846667
    164 5w4k:20 (2.7) BS01 rna ? GO:0003735 ... P60493 28846667
    165 5w4k:20 (2.7) BS02 rna ? GO:0003735 ... P60493 28846667
    166 5w4k:20 (2.7) BS03 rna ? GO:0003735 ... P60493 28846667
    167 5w4k:21 (2.7) BS01 rna ? GO:0003735 ... P60494 28846667
    168 5w4k:21 (2.7) BS02 rna ? GO:0003735 ... P60494 28846667
    169 5w4k:21 (2.7) BS03 MG ? GO:0003735 ... P60494 28846667
    170 5w4k:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 28846667
    171 5w4k:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 28846667
    172 5w4k:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 28846667
    173 5w4k:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 28846667
    174 5w4k:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 28846667
    175 5w4k:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 28846667
    176 5w4k:25 (2.7) BS01 rna ? GO:0003735 ... P80339 28846667
    177 5w4k:25 (2.7) BS02 MG ? GO:0003735 ... P80339 28846667
    178 5w4k:25 (2.7) BS03 ZN ? GO:0003735 ... P80339 28846667
    179 5w4k:25 (2.7) BS04 MG ? GO:0003735 ... P80339 28846667
    180 5w4k:26 (2.7) BS01 rna ? GO:0000049 ... P35871 28846667
    181 5w4k:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 28846667
    182 5w4k:27 (2.7) BS01 rna ? GO:0003735 ... P80340 28846667
    183 5w4k:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 28846667
    184 5w4k:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 28846667
    185 5w4k:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 28846667
    186 5w4k:2D (2.7) BS01 rna ? GO:0002181 ... P60405 28846667
    187 5w4k:2D (2.7) BS02 rna ? GO:0002181 ... P60405 28846667
    188 5w4k:2D (2.7) BS03 MG ? GO:0002181 ... P60405 28846667
    189 5w4k:2D (2.7) BS04 MG ? GO:0002181 ... P60405 28846667
    190 5w4k:2D (2.7) BS05 MG ? GO:0002181 ... P60405 28846667
    191 5w4k:2D (2.7) BS06 MG ? GO:0002181 ... P60405 28846667
    192 5w4k:2D (2.7) BS07 MG ? GO:0002181 ... P60405 28846667
    193 5w4k:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 28846667
    194 5w4k:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 28846667
    195 5w4k:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 28846667
    196 5w4k:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 28846667
    197 5w4k:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 28846667
    198 5w4k:2F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 28846667
    199 5w4k:2F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 28846667
    200 5w4k:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 28846667
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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