Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5v5x:A (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    2 5v5x:A (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    3 5v5x:A (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    4 5v5x:A (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    5 5v5x:A (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    6 5v5x:A (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    7 5v5x:A (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338
    8 5v5x:A (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    9 5v5x:A (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    10 5v5x:A (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    11 5v5x:A (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    12 5v5x:A (3.5) BS12 MAN ? GO:0005509 ... Q91XX3 29087338
    13 5v5x:B (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    14 5v5x:B (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    15 5v5x:B (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    16 5v5x:B (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    17 5v5x:B (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    18 5v5x:B (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    19 5v5x:B (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338
    20 5v5x:B (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    21 5v5x:B (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    22 5v5x:B (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    23 5v5x:B (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    24 5v5x:B (3.5) BS12 MAN ? GO:0005509 ... Q91XX3 29087338
    25 5v5x:C (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    26 5v5x:C (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    27 5v5x:C (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    28 5v5x:C (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    29 5v5x:C (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    30 5v5x:C (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    31 5v5x:C (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338
    32 5v5x:C (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    33 5v5x:C (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    34 5v5x:C (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    35 5v5x:C (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    36 5v5x:D (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    37 5v5x:D (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    38 5v5x:D (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    39 5v5x:D (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    40 5v5x:D (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    41 5v5x:D (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    42 5v5x:D (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338
    43 5v5x:D (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    44 5v5x:D (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    45 5v5x:D (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    46 5v5x:D (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    47 5v5x:D (3.5) BS12 MAN ? GO:0005509 ... Q91XX3 29087338
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218