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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5t62:D (3.3) BS01 rna ? GO:0002181 ... P0CX45 28179369
    2 5t62:E (3.3) BS01 rna ? GO:0000027 ... P14126 28179369
    3 5t62:F (3.3) BS01 rna ? GO:0002181 ... P10664 28179369
    4 5t62:F (3.3) BS02 rna ? GO:0002181 ... P10664 28179369
    5 5t62:G (3.3) BS01 rna ? GO:0000027 ... P26321 28179369
    6 5t62:G (3.3) BS02 rna ? GO:0000027 ... P26321 28179369
    7 5t62:H (3.3) BS01 rna ? GO:0000027 ... Q02326 28179369
    8 5t62:I (3.3) BS01 rna ? GO:0000463 ... P05737 28179369
    9 5t62:I (3.3) BS02 rna ? GO:0000463 ... P05737 28179369
    10 5t62:J (3.3) BS01 rna ? GO:0000470 ... P17076 28179369
    11 5t62:J (3.3) BS02 rna ? GO:0000470 ... P17076 28179369
    12 5t62:K (3.3) BS01 rna ? GO:0002181 ... P05738 28179369
    13 5t62:L (3.3) BS01 rna ? GO:0000027 ... P41805 28179369
    14 5t62:L (3.3) BS02 rna ? GO:0000027 ... P41805 28179369
    15 5t62:M (3.3) BS01 rna ? GO:0000027 ... P0C0W9 28179369
    16 5t62:M (3.3) BS02 rna ? GO:0000027 ... P0C0W9 28179369
    17 5t62:N (3.3) BS01 rna ? GO:0002181 ... Q12690 28179369
    18 5t62:O (3.3) BS01 rna ? GO:0000027 ... P36105 28179369
    19 5t62:Q (3.3) BS01 rna ? GO:0002181 ... P0CX27 28179369
    20 5t62:R (3.3) BS01 rna ? GO:0002181 ... P0CX25 28179369
    21 5t62:S (3.3) BS01 rna N/A N/A N/A 28179369
    22 5t62:V (3.3) BS01 rna ? GO:0000055 ... P38861 28179369
    23 5t62:W (3.3) BS01 rna 3.6.1.- GO:0000027 ... P53145 28179369
    24 5t62:W (3.3) BS02 GNP 3.6.1.- GO:0000027 ... P53145 28179369
    25 5t62:W (3.3) BS03 MG 3.6.1.- GO:0000027 ... P53145 28179369
    26 5t62:X (3.3) BS01 rna ? GO:0000054 ... Q12522 28179369
    27 5t62:a (3.3) BS01 rna ? GO:0002181 ... P05748 28179369
    28 5t62:a (3.3) BS02 rna ? GO:0002181 ... P05748 28179369
    29 5t62:b (3.3) BS01 rna ? GO:0000470 ... P26784 28179369
    30 5t62:c (3.3) BS01 rna ? GO:0000448 ... P05740 28179369
    31 5t62:c (3.3) BS02 rna ? GO:0000448 ... P05740 28179369
    32 5t62:d (3.3) BS01 rna ? GO:0002181 ... P0CX49 28179369
    33 5t62:e (3.3) BS01 rna ? GO:0002181 ... P0CX82 28179369
    34 5t62:f (3.3) BS01 rna ? GO:0002181 ... P0CX23 28179369
    35 5t62:f (3.3) BS02 rna ? GO:0002181 ... P0CX23 28179369
    36 5t62:g (3.3) BS01 rna ? GO:0002181 ... Q02753 28179369
    37 5t62:g (3.3) BS02 rna ? GO:0002181 ... Q02753 28179369
    38 5t62:h (3.3) BS01 rna ? GO:0002181 ... P05749 28179369
    39 5t62:i (3.3) BS01 rna ? GO:0002181 ... P0CX41 28179369
    40 5t62:j (3.3) BS01 rna ? GO:0002181 ... P04449 28179369
    41 5t62:k (3.3) BS01 rna ? GO:0000027 ... P04456 28179369
    42 5t62:k (3.3) BS02 rna ? GO:0000027 ... P04456 28179369
    43 5t62:l (3.3) BS01 rna ? GO:0002181 ... P05743 28179369
    44 5t62:l (3.3) BS02 rna ? GO:0002181 ... P05743 28179369
    45 5t62:m (3.3) BS01 rna ? GO:0002181 ... P0C2H6 28179369
    46 5t62:n (3.3) BS01 rna ? GO:0002181 ... P02406 28179369
    47 5t62:o (3.3) BS01 rna ? GO:0002181 ... P05747 28179369
    48 5t62:p (3.3) BS01 rna ? GO:0002181 ... P14120 28179369
    49 5t62:q (3.3) BS01 rna ? GO:0002181 ... P0C2H8 28179369
    50 5t62:r (3.3) BS01 rna ? GO:0002181 ... P38061 28179369
    51 5t62:s (3.3) BS01 rna ? GO:0000027 ... P05744 28179369
    52 5t62:t (3.3) BS01 rna ? GO:0002181 ... P87262 28179369
    53 5t62:u (3.3) BS01 rna ? GO:0000463 ... P0CX84 28179369
    54 5t62:u (3.3) BS02 rna ? GO:0000463 ... P0CX84 28179369
    55 5t62:v (3.3) BS01 rna ? GO:0002181 ... P05745 28179369
    56 5t62:w (3.3) BS01 rna ? GO:0000448 ... P49166 28179369
    57 5t62:w (3.3) BS02 rna ? GO:0000448 ... P49166 28179369
    58 5t62:x (3.3) BS01 rna ? GO:0002181 ... P49167 28179369
    59 5t62:y (3.3) BS01 rna ? GO:0002181 ... P04650 28179369
    60 5t62:y (3.3) BS02 rna ? GO:0002181 ... P04650 28179369
    61 5t62:z (3.3) BS01 rna ? GO:0000027 ... P0CH08 28179369
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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