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BioLiP
Download all results in tab-seperated text for 99 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5t2c:A0 (3.6) BS01 rna ? GO:0002181 ... P62269 27752045
    2 5t2c:AB (3.6) BS01 rna ? GO:0002181 ... P60866 27752045
    3 5t2c:AD (3.6) BS01 rna ? GO:0002181 ... P62266 27752045
    4 5t2c:AE (3.6) BS01 rna ? GO:0002181 ... P62854 27752045
    5 5t2c:AF (3.6) BS01 rna ? GO:0000028 ... P62857 27752045
    6 5t2c:AG (3.6) BS01 rna ? GO:0002181 ... P62273 27752045
    7 5t2c:AH (3.6) BS01 rna ? GO:0002181 ... P62979 27752045
    8 5t2c:AI (3.6) BS01 rna ? GO:0001891 ... P63244 27752045
    9 5t2c:AJ (3.6) BS01 rna ? GO:0002181 ... P15880 27752045
    10 5t2c:AK (3.6) BS01 rna ? GO:0000082 ... P62753 27752045
    11 5t2c:AL (3.6) BS01 rna ? GO:0002181 ... P46781 27752045
    12 5t2c:AM (3.6) BS01 rna ? GO:0002181 ... P25398 27752045
    13 5t2c:AN (3.6) BS01 rna ? GO:0002181 ... P62277 27752045
    14 5t2c:AN (3.6) BS02 rna ? GO:0002181 ... P62277 27752045
    15 5t2c:AO (3.6) BS01 rna ? GO:0000028 ... P62263 27752045
    16 5t2c:AP (3.6) BS01 rna ? GO:0002181 ... P62244 27752045
    17 5t2c:AQ (3.6) BS01 rna ? GO:0002181 ... P62847 27752045
    18 5t2c:AR (3.6) BS01 rna ? GO:0002181 ... P62851 27752045
    19 5t2c:AT (3.6) BS01 rna ? GO:0003735 ... P62861 27752045
    20 5t2c:AU (3.6) BS01 rna ? GO:0000028 ... P39019 27752045
    21 5t2c:AV (3.6) BS01 rna ? GO:0000028 ... P42677 27752045
    22 5t2c:Ao (3.6) BS01 rna ? GO:0000028 ... P08865 27752045
    23 5t2c:Ap (3.6) BS01 rna ? GO:0002181 ... P61247 27752045
    24 5t2c:Ap (3.6) BS02 rna ? GO:0002181 ... P61247 27752045
    25 5t2c:Aq (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 27752045
    26 5t2c:Ar (3.6) BS01 rna ? GO:0002181 ... P62701 27752045
    27 5t2c:As (3.6) BS01 rna ? GO:0000028 ... P46782 27752045
    28 5t2c:As (3.6) BS02 rna ? GO:0000028 ... P46782 27752045
    29 5t2c:At (3.6) BS01 rna ? GO:0001843 ... P62081 27752045
    30 5t2c:Au (3.6) BS01 rna ? GO:0000462 ... P62241 27752045
    31 5t2c:Au (3.6) BS02 rna ? GO:0000462 ... P62241 27752045
    32 5t2c:Av (3.6) BS01 rna ? GO:0002181 ... P46783 27752045
    33 5t2c:Aw (3.6) BS01 rna ? GO:0002181 ... P62280 27752045
    34 5t2c:Ax (3.6) BS01 rna ? GO:0000028 ... P62841 27752045
    35 5t2c:Ay (3.6) BS01 rna ? GO:0000462 ... P62249 27752045
    36 5t2c:Az (3.6) BS01 rna ? GO:0002181 ... P08708 27752045
    37 5t2c:D (3.6) BS01 rna ? GO:0002181 ... P62917 27752045
    38 5t2c:D (3.6) BS02 rna ? GO:0002181 ... P62917 27752045
    39 5t2c:E (3.6) BS01 rna ? GO:0002181 ... P39023 27752045
    40 5t2c:F (3.6) BS01 rna ? GO:0002181 ... P36578 27752045
    41 5t2c:F (3.6) BS02 rna ? GO:0002181 ... P36578 27752045
    42 5t2c:G (3.6) BS01 rna ? GO:0000027 ... P46777 27752045
    43 5t2c:G (3.6) BS02 rna ? GO:0000027 ... P46777 27752045
    44 5t2c:H (3.6) BS01 rna ? GO:0000027 ... Q02878 27752045
    45 5t2c:I (3.6) BS01 rna ? GO:0002181 ... P40429 27752045
    46 5t2c:J (3.6) BS01 rna ? GO:0003735 ... P18621 27752045
    47 5t2c:J (3.6) BS02 rna ? GO:0003735 ... P18621 27752045
    48 5t2c:K (3.6) BS01 rna ? GO:0002181 ... Q07020 27752045
    49 5t2c:L (3.6) BS01 rna ? GO:0002181 ... P84098 27752045
    50 5t2c:L (3.6) BS02 rna ? GO:0002181 ... P84098 27752045
    51 5t2c:M (3.6) BS01 rna ? GO:0002181 ... Q02543 27752045
    52 5t2c:M (3.6) BS02 rna ? GO:0002181 ... Q02543 27752045
    53 5t2c:N (3.6) BS01 rna ? GO:0002181 ... P46778 27752045
    54 5t2c:N (3.6) BS02 rna ? GO:0002181 ... P46778 27752045
    55 5t2c:O (3.6) BS01 rna ? GO:0002181 ... P35268 27752045
    56 5t2c:P (3.6) BS01 rna ? GO:0000122 ... P62829 27752045
    57 5t2c:Q (3.6) BS01 rna ? GO:0000027 ... P83731 27752045
    58 5t2c:R (3.6) BS01 rna ? GO:0000027 ... P62750 27752045
    59 5t2c:R (3.6) BS02 rna ? GO:0000027 ... P62750 27752045
    60 5t2c:S (3.6) BS01 rna ? GO:0002181 ... P61254 27752045
    61 5t2c:S (3.6) BS02 rna ? GO:0002181 ... P61254 27752045
    62 5t2c:T (3.6) BS01 rna ? GO:0002181 ... P61353 27752045
    63 5t2c:U (3.6) BS01 rna ? GO:0002181 ... P46776 27752045
    64 5t2c:V (3.6) BS01 rna ? GO:0002181 ... P47914 27752045
    65 5t2c:W (3.6) BS01 rna ? GO:0002181 ... P62888 27752045
    66 5t2c:W (3.6) BS02 rna ? GO:0002181 ... P62888 27752045
    67 5t2c:X (3.6) BS01 rna ? GO:0002181 ... P62899 27752045
    68 5t2c:Y (3.6) BS01 rna ? GO:0002181 ... P62910 27752045
    69 5t2c:Z (3.6) BS01 rna ? GO:0000049 ... P18077 27752045
    70 5t2c:a (3.6) BS01 rna ? GO:0002181 ... P49207 27752045
    71 5t2c:b (3.6) BS01 rna ? GO:0000463 ... P42766 27752045
    72 5t2c:b (3.6) BS02 rna ? GO:0000463 ... P42766 27752045
    73 5t2c:c (3.6) BS01 rna ? GO:0002181 ... Q9Y3U8 27752045
    74 5t2c:d (3.6) BS01 rna ? GO:0002181 ... P61927 27752045
    75 5t2c:d (3.6) BS02 rna ? GO:0002181 ... P61927 27752045
    76 5t2c:e (3.6) BS01 rna ? GO:0001501 ... P63173 27752045
    77 5t2c:f (3.6) BS01 rna ? GO:0002181 ... P62891 27752045
    78 5t2c:f (3.6) BS02 rna ? GO:0002181 ... P62891 27752045
    79 5t2c:g (3.6) BS01 rna ? GO:0002181 ... P62987 27752045
    80 5t2c:i (3.6) BS01 rna ? GO:0002181 ... P83881 27752045
    81 5t2c:i (3.6) BS02 rna ? GO:0002181 ... P83881 27752045
    82 5t2c:j (3.6) BS01 rna ? GO:0002181 ... P61513 27752045
    83 5t2c:k (3.6) BS01 rna ? GO:0002181 ... P46779 27752045
    84 5t2c:l (3.6) BS01 rna ? GO:0002181 ... P62906 27752045
    85 5t2c:l (3.6) BS02 rna ? GO:0002181 ... P62906 27752045
    86 5t2c:m (3.6) BS01 rna ? GO:0000463 ... P18124 27752045
    87 5t2c:m (3.6) BS02 rna ? GO:0000463 ... P18124 27752045
    88 5t2c:n (3.6) BS01 rna ? GO:0000470 ... P62424 27752045
    89 5t2c:n (3.6) BS02 rna ? GO:0000470 ... P62424 27752045
    90 5t2c:o (3.6) BS01 rna ? GO:0002181 ... P32969 27752045
    91 5t2c:p (3.6) BS01 rna ? GO:0000027 ... Q96L21 27752045
    92 5t2c:p (3.6) BS02 rna ? GO:0000027 ... Q96L21 27752045
    93 5t2c:q (3.6) BS01 rna ? GO:0000027 ... P62913 27752045
    94 5t2c:q (3.6) BS02 rna ? GO:0000027 ... P62913 27752045
    95 5t2c:r (3.6) BS01 rna ? GO:0001824 ... P26373 27752045
    96 5t2c:r (3.6) BS02 rna ? GO:0001824 ... P26373 27752045
    97 5t2c:s (3.6) BS01 rna ? GO:0002181 ... P50914 27752045
    98 5t2c:t (3.6) BS01 rna ? GO:0002181 ... P61313 27752045
    99 5t2c:t (3.6) BS02 rna ? GO:0002181 ... P61313 27752045
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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